RetrogeneDB ID: | retro_btau_1314 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 4:27691148..27691586(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D1 | ||
Ensembl ID: | ENSBTAG00000020796 | ||
Aliases: | None | ||
Description: | Ubiquitin-conjugating enzyme E2 D1 [Source:UniProtKB/Swiss-Prot;Acc:Q2TA10] |
Percent Identity: | 70.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFL-TVHFPTDYPFKPPKIAF |
M.LK.IQK....LQRDPPAHCSA...GDDLFHWQAT.MG..DS.YQGG.FF..T.H.PTDYPFKPP..AF | |
Retrocopy | MVLKWIQKKSTGLQRDPPAHCSAELMGDDLFHWQATFMGLKDSPYQGGIFFR<TIHLPTDYPFKPPNVAF |
Parental | TTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCD-PNPDDPLVPDIAQIYKSDK-EKYNRH |
TTK..H.NINS..SICLD.L.SQWSPAL.VSKV...ICSLLCD.PNPDDP.VP..A..YK.D....YN.. | |
Retrocopy | TTKV*HTNINSGSSICLDTLWSQWSPALRVSKVFFFICSLLCD<PNPDDPPVPGTAHTYKADR<KDYNTL |
Parental | AREWTQKYAM |
AREWTQKYAM | |
Retrocopy | AREWTQKYAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 13 .41 RPM |
ERP005899_muscle | 0 .00 RPM | 3 .22 RPM |
SRP017611_brain | 0 .00 RPM | 7 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .96 RPM |
SRP017611_liver | 0 .00 RPM | 2 .49 RPM |
SRP030211_testis | 0 .01 RPM | 3 .44 RPM |