RetrogeneDB ID: | retro_tsyr_1430 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_43821:11217..11500(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D1 | ||
Ensembl ID: | ENSTSYG00000011229 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 1 [Source:HGNC Symbol;Acc:12474] |
Percent Identity: | 64.95 % |
Parental protein coverage: | 64.63 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | LKRIQKELSDLQRDP-PAHCSAGPVGDDLFH-WQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT |
LK.IQK....L..DP.P....AGPVGDD.FH.WQ.TIMG..D..YQ.GVFFLT.HFP.D.PFKP.K.A.T | |
Retrocopy | LKNIQKN*NGLPWDP<PVQ*LAGPVGDDMFH<WQDTIMGAKDRLYQDGVFFLTIHFPKD*PFKPHKVAGT |
Parental | TKIYHPNINSNGSICLDILRSQWSPAL |
T.IYHPN..SNGSICL.IL.S..S.AL | |
Retrocopy | TSIYHPNVDSNGSICLYILWS*LSAAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |