RetrogeneDB ID:

retro_ttru_1670

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_84701:89554..89995(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2D1
Ensembl ID:ENSTTRG00000009244
Aliases:None
Description:ubiquitin-conjugating enzyme E2D 1 [Source:HGNC Symbol;Acc:12474]


Retrocopy-Parental alignment summary:






>retro_ttru_1670
ATGGCGTTGAAACGGATGAATAAGGAGCTTAGCGGTTTGGCCCGTGACCCTCCAGCACAATGTTCTGCAGGTCCACTTGG
GGACGATATGTTTCATTGGCAAGCCAGAATTATGGGACCTAACGACAGCCCATGTCAAGGCGGTGTATTCTTTTTGACGA
TTCATTTTCCTACAGACTACCCCTTCAAACCACCTAAGGCTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGT
AATGGCAGCGTTTGTCTCGATATTCTAAGATCACAGTGGTCTCCTGCTTTAACTATTTCTAAAGTTCTTTAATCCATTTG
TTCACTGCTATGTGATCCAAACCCAGATGACCCCCTAGTGCCAGAGATTGCACGGATCTATAAAACAAACAGAGATAAGT
ACAACAGAATATCTCGGGCACGGACTCAGAAGTAGGCCATG

ORF - retro_ttru_1670 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.95 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT
MALKR..KELS.L.RDPPA.CSAGP.GDD.FHWQA.IMGP.DS..QGGVFFLT.HFPTDYPFKPPK.AFT
RetrocopyMALKRMNKELSGLARDPPAQCSAGPLGDDMFHWQARIMGPNDSPCQGGVFFLTIHFPTDYPFKPPKAAFT
ParentalTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE
T.IYHPNINSNGS.CLDILRSQWSPALT.SKVL.SICSLLCDPNPDDPLVP.IA.IYK....KYNR..R.
RetrocopyTRIYHPNINSNGSVCLDILRSQWSPALTISKVL*SICSLLCDPNPDDPLVPEIARIYKTNRDKYNRISRA
ParentalWTQKYAM
.TQK.AM
RetrocopyRTQK*AM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1670 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1670 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 90 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000207965 retrocopies
Choloepus hoffmanni ENSCHOG0000000121321 retrocopies
Dasypus novemcinctus ENSDNOG000000138211 retrocopy
Echinops telfairi ENSETEG000000022802 retrocopies
Homo sapiens ENSG000000724012 retrocopies
Macropus eugenii ENSMEUG000000072381 retrocopy
Microcebus murinus ENSMICG000000102531 retrocopy
Myotis lucifugus ENSMLUG0000000571013 retrocopies
Mus musculus ENSMUSG0000001992722 retrocopies
Procavia capensis ENSPCAG000000069981 retrocopy
Pteropus vampyrus ENSPVAG000000073942 retrocopies
Sarcophilus harrisii ENSSHAG000000104811 retrocopy
Tarsius syrichta ENSTSYG000000112293 retrocopies
Tursiops truncatus ENSTTRG000000013611 retrocopy
Tursiops truncatus ENSTTRG000000051561 retrocopy
Tursiops truncatus ENSTTRG00000009244 8 retrocopies
Vicugna pacos ENSVPAG000000069445 retrocopies



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