RetrogeneDB ID: | retro_btau_296 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 1:58243451..58244147(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000000242 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA2 | ||
Ensembl ID: | ENSBTAG00000000990 | ||
Aliases: | None | ||
Description: | Proteasome subunit alpha type-2 [Source:UniProtKB/Swiss-Prot;Acc:Q3T0Y5] |
Percent Identity: | 99.57 % |
Parental protein coverage: | 99.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHI |
ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHI | |
Retrocopy | ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHI |
Parental | GLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG |
GLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQS.GVRPFGVSLLICGWNEG | |
Retrocopy | GLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSCGVRPFGVSLLICGWNEG |
Parental | RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI |
RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI | |
Retrocopy | RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGI |
Parental | CNEAGFRRLTPTEVKDYLAAIA |
CNEAGFRRLTPTEVKDYLAAIA | |
Retrocopy | CNEAGFRRLTPTEVKDYLAAIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 1 .30 RPM | 41 .02 RPM |
ERP005899_muscle | 0 .74 RPM | 53 .32 RPM |
SRP017611_brain | 0 .32 RPM | 19 .14 RPM |
SRP017611_kidney | 0 .30 RPM | 36 .93 RPM |
SRP017611_liver | 0 .23 RPM | 43 .64 RPM |
SRP030211_testis | 0 .59 RPM | 38 .38 RPM |