Parental gene: | PSMA2, ENSSSCG00000020769 |
| Aliases: | None |
| Description: | Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:I3LAB6] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 18:56857685..56868920(+) |
>ENSSSCG00000020769
ATGGCGGAGCGTGGTTACAGCTTTTCGCTGACTACATTCAGCCCATCTGGTAAACTTGTACAGATTGAATATGCTTTGGC
TGCTGTAGCTGGAGGAGCCCCTTCAGTGGGAATTAAAGCTGCAAATGGTGTGGTCTTAGCAACTGAGAAGAAACAGAAAT
CCATCCTGTATGACGAGCGAAGTGTCCACAAAGTGGAGCCCATCACCAAGCACATAGGTTTGGTGTATAGCGGCATGGGC
CCAGACTACAGAGTGCTTGTGCACAGGGCTCGAAAACTAGCTCAGCAATACTATCTCGTTTACCAAGAACCCATTCCCAC
AGCTCAGCTGGTACAGAGAGTAGCTTCCGTGATGCAAGAATACACCCAGTCAGGTGGTGTTCGTCCATTTGGAGTGTCTT
TGCTTATTTGTGGTTGGAATGAGGGACGACCGTATTTATTTCAGTCAGATCCATCTGGAGCCTACTTTGCTTGGAAAGCC
ACTGCAATGGGAAAGAACTATGTGAATGGGAAAACGTTCCTTGAGAAAAGATACAATGAAGATCTGGAACTTGAAGATGC
CATTCACACAGCCATATTAACCCTAAAGGAGAGCTTTGAAGGGCAAATGACAGAAGATAACATAGAAGTTGGCATCTGCA
ATGAAGCCGGATTTAGGAGGCTTACTCCCACCGAAGTTAAGGATTACCTGGCTGCCATTGCATAA
ATGGCGGAGCGTGGTTACAGCTTTTCGCTGACTACATTCAGCCCATCTGGTAAACTTGTACAGATTGAATATGCTTTGGC
TGCTGTAGCTGGAGGAGCCCCTTCAGTGGGAATTAAAGCTGCAAATGGTGTGGTCTTAGCAACTGAGAAGAAACAGAAAT
CCATCCTGTATGACGAGCGAAGTGTCCACAAAGTGGAGCCCATCACCAAGCACATAGGTTTGGTGTATAGCGGCATGGGC
CCAGACTACAGAGTGCTTGTGCACAGGGCTCGAAAACTAGCTCAGCAATACTATCTCGTTTACCAAGAACCCATTCCCAC
AGCTCAGCTGGTACAGAGAGTAGCTTCCGTGATGCAAGAATACACCCAGTCAGGTGGTGTTCGTCCATTTGGAGTGTCTT
TGCTTATTTGTGGTTGGAATGAGGGACGACCGTATTTATTTCAGTCAGATCCATCTGGAGCCTACTTTGCTTGGAAAGCC
ACTGCAATGGGAAAGAACTATGTGAATGGGAAAACGTTCCTTGAGAAAAGATACAATGAAGATCTGGAACTTGAAGATGC
CATTCACACAGCCATATTAACCCTAAAGGAGAGCTTTGAAGGGCAAATGACAGAAGATAACATAGAAGTTGGCATCTGCA
ATGAAGCCGGATTTAGGAGGCTTACTCCCACCGAAGTTAAGGATTACCTGGCTGCCATTGCATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 44 .07 RPM |
| SRP014902_testis | 39 .89 RPM |
| SRP018856_adipose | 90 .16 RPM |
| SRP018288_kidney | 93 .97 RPM |
| SRP018288_lung | 29 .12 RPM |
| SRP018288_liver | 60 .13 RPM |
| SRP018288_heart | 67 .53 RPM |
| SRP035408_liver | 70 .01 RPM |
| SRP035408_brain | 65 .11 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009433 | ortholog_one2one | 3 retrogenes | |
| Bos taurus | ENSBTAG00000000990 | ortholog_one2one | 3 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000000644 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000013134 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000011910 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000015835 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000106588 | possible_ortholog | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000006538 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000010086 | possible_ortholog | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000018145 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000015671 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000003177 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000012092 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000016805 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000017612 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000019120 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000049920 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000014299 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_419 | 75.16 | 64.96 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_sscr_440 | 75.16 | 64.96 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_sscr_1082 | 66.67 | 58.97 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000020769 retrocopies