Parental gene: | Psma2, ENSMUSG00000015671 |
| Aliases: | Psma2, Lmpc3 |
| Description: | proteasome (prosome, macropain) subunit, alpha type 2 [Source:MGI Symbol;Acc:MGI:104885] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 13:14613241..14625671(+) |
>ENSMUSG00000015671
ATGGCAGAGCGCGGTTACAGCTTCTCGCTGACTACATTCAGCCCATCTGGTAAGCTTGTCCAGATTGAATATGCCTTGGC
TGCGGTAGCTGGAGGGGCCCCGTCAGTGGGGATTAAAGCTGCAAATGGCGTAGTATTAGCAACCGAGAAAAAGCAGAAAT
CCATCCTGTATGATGAAAGGAGTGTTCACAAGGTGGAGCCCATTACCAAGCACATCGGTTTGGTGTACAGTGGCATGGGC
CCCGATTACAGAGTACTTGTACACAGAGCTCGGAAACTTGCTCAGCAATACTACCTTGTTTACCAAGAACCCATTCCCAC
AGCCCAGCTGGTACAGAGAGTAGCCTCTGTGATGCAGGAGTACACGCAGTCAGGTGGTGTTCGTCCATTTGGTGTTTCTT
TACTCATTTGTGGGTGGAATGAGGGACGACCATATTTATTTCAGTCAGATCCATCTGGAGCTTACTTTGCCTGGAAGGCC
ACAGCAATGGGAAAGAACTATGTGAACGGGAAAACTTTCCTTGAGAAAAGATATAATGAAGACCTAGAACTGGAGGATGC
CATTCATACAGCCATCTTAACCCTAAAGGAAAGCTTTGAAGGGCAGATGACAGAAGATAACATAGAAGTTGGGATCTGCA
ATGAGGCTGGCTTTAGGAGGCTCACTCCAACTGAAGTGAGGGATTACCTGGCTGCCATAGCGTGA
ATGGCAGAGCGCGGTTACAGCTTCTCGCTGACTACATTCAGCCCATCTGGTAAGCTTGTCCAGATTGAATATGCCTTGGC
TGCGGTAGCTGGAGGGGCCCCGTCAGTGGGGATTAAAGCTGCAAATGGCGTAGTATTAGCAACCGAGAAAAAGCAGAAAT
CCATCCTGTATGATGAAAGGAGTGTTCACAAGGTGGAGCCCATTACCAAGCACATCGGTTTGGTGTACAGTGGCATGGGC
CCCGATTACAGAGTACTTGTACACAGAGCTCGGAAACTTGCTCAGCAATACTACCTTGTTTACCAAGAACCCATTCCCAC
AGCCCAGCTGGTACAGAGAGTAGCCTCTGTGATGCAGGAGTACACGCAGTCAGGTGGTGTTCGTCCATTTGGTGTTTCTT
TACTCATTTGTGGGTGGAATGAGGGACGACCATATTTATTTCAGTCAGATCCATCTGGAGCTTACTTTGCCTGGAAGGCC
ACAGCAATGGGAAAGAACTATGTGAACGGGAAAACTTTCCTTGAGAAAAGATATAATGAAGACCTAGAACTGGAGGATGC
CATTCATACAGCCATCTTAACCCTAAAGGAAAGCTTTGAAGGGCAGATGACAGAAGATAACATAGAAGTTGGGATCTGCA
ATGAGGCTGGCTTTAGGAGGCTCACTCCAACTGAAGTGAGGGATTACCTGGCTGCCATAGCGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 53 .83 RPM |
| SRP007412_cerebellum | 49 .89 RPM |
| SRP007412_heart | 43 .74 RPM |
| SRP007412_kidney | 57 .56 RPM |
| SRP007412_liver | 44 .27 RPM |
| SRP007412_testis | 21 .54 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000009433 | ortholog_one2one | 3 retrogenes | |
| Bos taurus | ENSBTAG00000000990 | ortholog_one2one | 3 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000000644 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000013134 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000011910 | ortholog_one2one | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000015835 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000106588 | possible_ortholog | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000006538 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000010086 | possible_ortholog | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000018145 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000003177 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000012092 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000016805 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000017612 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000019120 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000049920 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000020769 | ortholog_one2one | 3 retrogenes | |
| Tarsius syrichta | ENSTSYG00000014299 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_1104 | 90.99 | 99.57 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmus_1105 | 92.74 | 99.57 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmus_1215 | 88.48 | 70.09 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmus_1320 | 56.91 | 52.14 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000015671 retrocopies