Parental gene:

PSMA2, ENSBTAG00000000990

Aliases:None
Description:Proteasome subunit alpha type-2 [Source:UniProtKB/Swiss-Prot;Acc:Q3T0Y5]
Organism:Cow (Bos taurus)
Coordinates:4:78821819..78832470(+)


>ENSBTAG00000000990
ATGGCGGAGCGTGGTTACAGCTTTTCGCTGACTACATTCAGCCCGTCTGGTAAACTTGTCCAGATAGAATATGCTTTGGC
TGCTGTAGCTGGAGGAGCTCCTTCAGTGGGAATTAAAGCTGCAAATGGCGTGGTCTTGGCAACTGAGAAGAAACAGAAAT
CCATTCTGTATGATGAGCGAAGTGTCCACAAAGTGGAACCAATCACCAAGCACATAGGTTTGGTGTATAGTGGCATGGGC
CCAGATTACAGGGTACTTGTGCACAGAGCTCGAAAACTAGCTCAACAGTACTATCTCGTTTACCAAGAACCCATTCCCAC
AGCTCAGCTGGTCCAGAGAGTAGCTTCTGTGATGCAGGAATACACCCAGTCAGGTGGTGTTCGCCCATTTGGAGTTTCTT
TACTTATTTGTGGTTGGAATGAGGGACGGCCATATTTATTTCAGTCAGATCCATCTGGAGCTTACTTTGCCTGGAAAGCC
ACAGCAATGGGAAAGAACTATGTGAATGGGAAAACTTTCCTTGAGAAAAGATATAATGAAGATCTGGAACTTGAAGATGC
CATTCATACAGCCATATTAACCCTAAAGGAAAGCTTTGAAGGGCAGATGACAGAAGATAATATAGAAGTTGGAATCTGCA
ACGAAGCCGGATTTAGGAGGCTTACCCCAACTGAAGTTAAGGATTATTTGGCTGCCATTGCATAA

Library Parental gene expression (RPM)
ERP005899_liver 41 .02 RPM
ERP005899_muscle 53 .32 RPM
SRP017611_brain 19 .14 RPM
SRP017611_kidney 36 .93 RPM
SRP017611_liver 43 .64 RPM
SRP030211_testis 38 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009433 ortholog_one2one 3 retrogenes
retro_amel_1029, retro_amel_1336, retro_amel_1379,
Choloepus hoffmanni ENSCHOG00000000644 ortholog_one2one 1 retrogene
retro_chof_893,
Callithrix jacchus ENSCJAG00000007730 ortholog_one2one 4 retrogenes
retro_cjac_1096, retro_cjac_1868, retro_cjac_2583, retro_cjac_852,
Cavia porcellus ENSCPOG00000013134 ortholog_one2one 1 retrogene
retro_cpor_1512,
Dasypus novemcinctus ENSDNOG00000011910 ortholog_one2one 2 retrogenes
retro_dnov_2202, retro_dnov_724,
Echinops telfairi ENSETEG00000015835 ortholog_one2one 2 retrogenes
retro_etel_1569, retro_etel_2022,
Homo sapiens ENSG00000106588 ortholog_one2many 2 retrogenes
retro_hsap_2199, retro_hsap_908,
Gorilla gorilla ENSGGOG00000006538 ortholog_one2many 1 retrogene
retro_ggor_735,
Myotis lucifugus ENSMLUG00000010086 possible_ortholog 2 retrogenes
retro_mluc_1050, retro_mluc_135,
Macaca mulatta ENSMMUG00000022451 ortholog_one2one 2 retrogenes
retro_mmul_1114, retro_mmul_923,
Mustela putorius furo ENSMPUG00000018145 ortholog_one2one 1 retrogene
retro_mputfur_548,
Mus musculus ENSMUSG00000015671 ortholog_one2one 4 retrogenes
retro_mmus_1104, retro_mmus_1105, retro_mmus_1215, retro_mmus_1320,
Nomascus leucogenys ENSNLEG00000003177 ortholog_one2one 1 retrogene
retro_nleu_329,
Oryctolagus cuniculus ENSOCUG00000012092 ortholog_one2one 1 retrogene
retro_ocun_774,
Otolemur garnettii ENSOGAG00000016805 ortholog_one2one 1 retrogene
retro_ogar_197,
Ochotona princeps ENSOPRG00000011793 ortholog_one2one 2 retrogenes
retro_opri_135, retro_opri_791,
Pongo abelii ENSPPYG00000017612 ortholog_one2one 2 retrogenes
retro_pabe_2076, retro_pabe_783,
Pan troglodytes ENSPTRG00000019120 ortholog_one2one 2 retrogenes
retro_ptro_1670, retro_ptro_628,
Rattus norvegicus ENSRNOG00000049920 ortholog_one2one 2 retrogenes
retro_rnor_2041, retro_rnor_2769,
Sus scrofa ENSSSCG00000020769 ortholog_one2one 3 retrogenes
retro_sscr_1082, retro_sscr_419, retro_sscr_440,
Ictidomys tridecemlineatus ENSSTOG00000013334 ortholog_one2one 1 retrogene
retro_itri_223,
Tarsius syrichta ENSTSYG00000014299 ortholog_one2one 2 retrogenes
retro_tsyr_132, retro_tsyr_246,
Tursiops truncatus ENSTTRG00000005649 ortholog_one2one 1 retrogene
retro_ttru_356,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_296 99.57 99.15
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2. retro_btau_384 91.45 100.00
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3. retro_btau_889 58.53 91.88
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Download FASTA sequences of all ENSBTAG00000000990 retrocopies