RetrogeneDB ID: | retro_hsap_908 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:87040437..87041092(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000254582 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA2 | ||
Ensembl ID: | ENSG00000106588 | ||
Aliases: | PSMA2, HC3, MU, PMSA2, PSC2 | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 2 [Source:HGNC Symbol;Acc:9531] |
Percent Identity: | 66.81 % |
Parental protein coverage: | 94.87 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEK-KQKSILYDERSVHKVEPIT |
M.E..YSFSLTT...S.K.V.IE.ALAA.AG.A.SVG.KAANG.VLATEK..QKSILYDE.SVH.VEPIT | |
Retrocopy | MEELSYSFSLTTLGLSSKFVHIE*ALAALAGKALSVGVKAANGMVLATEK<EQKSILYDEQSVHRVEPIT |
Parental | KHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGW |
KH.GLVYSGMG.DYR.LVH...KLA.QYY.VYQEPIPT.QLV...AS.MQEYT.SGG..PFGV.L.ICG. | |
Retrocopy | KHTGLVYSGMGADYRMLVHGVQKLAEQYYPVYQEPIPTTQLVEKLASEMQEYTESGGICPFGVFLPICGC |
Parental | NEGRPYLF-QSDPSGAYFAWKATAMGKNYVNGKTFL-EKRYNEDL-ELEDAIHTAILTLKESFEGQMTED |
..G..YL..Q.DPSGA.F.......GK.......FL.E.R.NEDL.E...AIH.AILTLKES...QMTED | |
Retrocopy | G-GQTYLL<QADPSGAFF--ECHSNGKELCDWENFL>ERRNNEDL<EI*NAIHIAILTLKESVKRQMTED |
Parental | NIEVGICNEAGFRRLT |
NIEVGICNEA.FR... | |
Retrocopy | NIEVGICNEAVFRKFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 17 .51 RPM |
bodymap2_adrenal | 0 .04 RPM | 26 .90 RPM |
bodymap2_brain | 0 .12 RPM | 24 .54 RPM |
bodymap2_breast | 0 .33 RPM | 38 .95 RPM |
bodymap2_colon | 0 .00 RPM | 30 .69 RPM |
bodymap2_heart | 0 .04 RPM | 12 .85 RPM |
bodymap2_kidney | 0 .08 RPM | 34 .74 RPM |
bodymap2_liver | 0 .00 RPM | 27 .06 RPM |
bodymap2_lung | 0 .12 RPM | 21 .01 RPM |
bodymap2_lymph_node | 0 .00 RPM | 22 .15 RPM |
bodymap2_ovary | 0 .00 RPM | 28 .80 RPM |
bodymap2_prostate | 0 .00 RPM | 19 .80 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 23 .04 RPM |
bodymap2_testis | 0 .00 RPM | 31 .33 RPM |
bodymap2_thyroid | 0 .00 RPM | 27 .17 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 18 .78 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_628 |
Pongo abelii | retro_pabe_783 |
Macaca mulatta | retro_mmul_1114 |
Callithrix jacchus | retro_cjac_852 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .07 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .05 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .04 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .10 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |