RetrogeneDB ID: | retro_btau_332 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 10:17080963..17081326(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAC1 | ||
Ensembl ID: | ENSBTAG00000009233 | ||
Aliases: | None | ||
Description: | Ras-related C3 botulinum toxin substrate 1 [Source:UniProtKB/Swiss-Prot;Acc:P62998] |
Percent Identity: | 62.81 % |
Parental protein coverage: | 67.22 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP |
.SANV..DGK.VNLG.WD..GQED.DRL.PLSY.QT....ICF.LV..AS.ENVR.K.Y.EV..HCP.T. | |
Retrocopy | HSANVTIDGKSVNLGIWDIVGQEDFDRLYPLSYLQTGILSICFFLVTSASLENVRVKCYLEV*YHCPYTA |
Parental | IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL |
IIL.G.KLDLR.DK.......E.KL...TY..GLA..KEI.AV.YLECSAL | |
Retrocopy | IILMGAKLDLRNDKAND*ETEENKLITVTYLKGLATTKEIQAV*YLECSAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 26 .10 RPM |
ERP005899_muscle | 0 .05 RPM | 201 .65 RPM |
SRP017611_brain | 0 .00 RPM | 102 .09 RPM |
SRP017611_kidney | 0 .00 RPM | 107 .58 RPM |
SRP017611_liver | 0 .00 RPM | 33 .98 RPM |
SRP030211_testis | 0 .00 RPM | 42 .85 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009233 | 2 retrocopies |
retro_btau_1601, retro_btau_332 ,
|
Canis familiaris | ENSCAFG00000015716 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026733 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021075 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009956 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018910 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000007272 | 4 retrocopies | |
Xenopus tropicalis | ENSXETG00000027593 | 1 retrocopy |