RetrogeneDB ID: | retro_mmul_2642 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:135556650..135557183(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4339 | ||
Ensembl ID: | ENSMMUG00000021075 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.67 % |
Parental protein coverage: | 99.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL-SYPQTDVFLIC |
AVGKTCLLISYT.NAFPGEYIPTV.DNYSANV.VDGKPVNLGLWD.AGQ.DYDRLRP..SYPQTDVFLIC | |
Retrocopy | AVGKTCLLISYTINAFPGEYIPTVSDNYSANVVVDGKPVNLGLWDIAGQDDYDRLRPH<SYPQTDVFLIC |
Parental | FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA |
FSLVSPASFENVRAKWYPEVR.HCPNTPIILVGTKLDLRDDKDT.EKLKEKKLTPITYPQGLAMAKEIGA | |
Retrocopy | FSLVSPASFENVRAKWYPEVRQHCPNTPIILVGTKLDLRDDKDTVEKLKEKKLTPITYPQGLAMAKEIGA |
Parental | VKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLL |
.KYLEC..LTQRGLKTVFD.AIRAVLCP.PVKK.KRKCLL | |
Retrocopy | AKYLECLVLTQRGLKTVFDKAIRAVLCPHPVKK-KRKCLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 1 .57 RPM | 250 .10 RPM |
SRP007412_brain_prefrontal_cortex | 0 .95 RPM | 187 .62 RPM |
SRP007412_cerebellum | 0 .90 RPM | 177 .26 RPM |
SRP007412_heart | 2 .12 RPM | 88 .62 RPM |
SRP007412_kidney | 0 .70 RPM | 125 .94 RPM |
SRP007412_liver | 1 .43 RPM | 73 .03 RPM |
SRP007412_testis | 1 .43 RPM | 39 .58 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4910 |
Pan troglodytes | retro_ptro_3274 |
Gorilla gorilla | retro_ggor_217 |
Pongo abelii | retro_pabe_3818 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009233 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000015716 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026733 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000018854 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021075 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000022009 | 8 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009956 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018910 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000007272 | 4 retrocopies | |
Xenopus tropicalis | ENSXETG00000027593 | 1 retrocopy |