RetrogeneDB ID: | retro_btau_493 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 12:32081993..32083373(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.64411 | ||
Ensembl ID: | ENSBTAG00000017557 | ||
Aliases: | None | ||
Description: | glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial [Source:RefSeq peptide;Acc:NP_001039801] |
Percent Identity: | 75.63 % |
Parental protein coverage: | 88.4 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 11 |
Parental | GHSLGDLDGIPIAVKDNFSTSGIETTCASNMLKGYVPP-YNATVVQKLLDQGALLMGK-TNLDEFAMGSG |
GHSL..LD.IPIAVKDNFSTSGIETTCASN.LK..V.P..N.T.V......G....GK.TNL.E.AMG.. | |
Retrocopy | GHSLWNLDEIPIAVKDNFSTSGIETTCASNILKS*VSP<LNSTEV---VGSGSSVNGK>TNLHESAMGYR |
Parental | STDGIFGPVKNPWSYS-KQYREKRKQNSHSENEDSNWLITGGSSGGSAAAVSAFTCFAALGSDTGGSTRN |
STDGIFGP..NPWSYS.KQYREKRKQ.SH.EN.DSNWLITGGSSGGSA.AVSAFTCF.ALG.D..GST.N | |
Retrocopy | STDGIFGPFINPWSYS<KQYREKRKQKSHGENKDSNWLITGGSSGGSAVAVSAFTCFIALGLDSRGSTSN |
Parental | PAAHCGVVGLKPSYGLVSRHGLIPLVNSM-DVPGILTRCVDDA-ATVLGVLAGHDPKDSTTIQDPV-KPF |
PAA...VVGLK.SY.LVS.HGLI.LVNSM.DVP.ILTR.VDDA...VL..LAGHD..DSTTIQDPV.KPF | |
Retrocopy | PAAPYEVVGLKSSYDLVSCHGLIALVNSM<DVPRILTRYVDDA<TNVLSILAGHDL*DSTTIQDPV>KPF |
Parental | TLPSLTDVSKLCIGIPKEYLTPELSSEVQSLWSKAANLFESEGAKVTEVSLPH-TSYSIVCYHVLCTSEV |
.LPSLT..SK.CIGIPKE.L.PELSSEVQS.WSKA.NLFESEGAKV.EVSLP..TSYS.VCYHVLCTSEV | |
Retrocopy | MLPSLTGESK*CIGIPKECLIPELSSEVQSFWSKAVNLFESEGAKVIEVSLPQ<TSYSVVCYHVLCTSEV |
Parental | ASNMARFDGLEYGHRCDSDVSTEAMYAATRREGFNDVVRGRILSGNFFLLK-ENYENYFVKAQKVRRLIA |
ASNMARFD.LEYGH..D.DVSTEAMYAAT..EGFND.V.GRILSGN.FL.K.ENYENYF.KA.KVR.LI. | |
Retrocopy | ASNMARFDRLEYGH*FDIDVSTEAMYAATKQEGFNDMVWGRILSGN-FLIK>ENYENYFIKAEKVR*LIT |
Parental | NDFVNVFNSGVDVLLTPTTLSEAVPYTEFIKEDNRTRSAQDDIFTQAV-NMAGLPAVSVPVALSSQGLPI |
NDFVNVFNSGVDVLLTPT.LSEAVPY...IKEDNR...AQ.DIFTQ.V.NMA.LP.VSVP.ALSSQGL.I | |
Retrocopy | NDFVNVFNSGVDVLLTPTALSEAVPYSKYIKEDNRI*IAQGDIFTQTV<NMAELPVVSVPTALSSQGLSI |
Parental | GLQFIGRAFCDQQL-LIVAKWFEKQVQFPVIQLQELMDDCSSVFENEKLA-SVSLK |
GLQF.G.A.CDQ.L...V.KWFEKQV.FPV.QL..LMDDCSS..EN..L..S.SLK | |
Retrocopy | GLQFNGCALCDQLL>FTVCKWFEKQVRFPVTQLIKLMDDCSSNCEN*MLS<SASLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 12 .98 RPM |
ERP005899_muscle | 0 .00 RPM | 20 .90 RPM |
SRP017611_brain | 0 .00 RPM | 12 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .83 RPM |
SRP017611_liver | 0 .00 RPM | 9 .89 RPM |
SRP030211_testis | 0 .05 RPM | 27 .40 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017557 | 3 retrocopies |
retro_btau_476, retro_btau_493 , retro_btau_616,
|
Choloepus hoffmanni | ENSCHOG00000001036 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006200 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000021670 | 1 retrocopy | |
Homo sapiens | ENSG00000130348 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000008261 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000008330 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013383 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000016883 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000018462 | 2 retrocopies |