RetrogeneDB ID: | retro_hsap_1321 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 14:36235043..36235984(+) | ||
Located in intron of: | ENSG00000174373 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000257957 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | QRSL1 | ||
Ensembl ID: | ENSG00000130348 | ||
Aliases: | QRSL1, GatA | ||
Description: | glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 [Source:HGNC Symbol;Acc:21020] |
Percent Identity: | 83.23 % |
Parental protein coverage: | 59.66 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NATVVQKLLDQGALLM-GKTNLDEFAMGSGSTDGVFGPVKNPWSYSKQYREKRKQNPHSENEDSDWLITG |
NA.VV.KLLD.GALLM.GKTNLDEFAM.SG...GVFGPVKNPWSYSKQYREKRKQN.H.ENEDSDWLITG | |
Retrocopy | NAIVVPKLLD*GALLM<GKTNLDEFAMRSGNAEGVFGPVKNPWSYSKQYREKRKQNLHFENEDSDWLITG |
Parental | GSSGGSAAAVSAFTCYAALGSDTGGSTRNPAAHCGLVGFKPSYGLVSRHGLIPLVNSMDVPGILTRCVDD |
GSSGGSA.A.SAFTCYAALGSDTGG.TRNPAA.CGLVGFKP.YGLVS.HGLI.L...M.V.GILTRCVDD | |
Retrocopy | GSSGGSAVAISAFTCYAALGSDTGGLTRNPAAYCGLVGFKPNYGLVSHHGLISLEDLMEVQGILTRCVDD |
Parental | AAIVLGALAGPDPRDSTTVHEPINKPFMLPSLADVSKLCIGIPKEYLVPELSSEVQSLWSKAADLFESEG |
AAIVLG.LA..DP.DSTT...P..KPFM.PSL..VSKLCIGIP.EYLV.ELSSEVQSLWSKAADLFESEG | |
Retrocopy | AAIVLGVLAEHDPTDSTTAQDPV-KPFMIPSLTNVSKLCIGIPEEYLVLELSSEVQSLWSKAADLFESEG |
Parental | AKVIEVSLPHTSYSIVCYHVLCTSEVASNMARFDGLQYGHRCDIDVSTEAMYAATRREGFNDVVRGRILS |
AK.IEVS..H..YSIVCYH.LCTSE.AS..AR.DGLQYGHRCD.DVSTEAMYAATRREGFND.VRGRILS | |
Retrocopy | AKAIEVSFSHITYSIVCYHLLCTSEAASSIARSDGLQYGHRCDTDVSTEAMYAATRREGFNDFVRGRILS |
Parental | GNFFLLKENYENYFVKAQKVRRLIANDFVNAFNSGV |
GN.FLLK..YENYF.KAQKVR.LIANDFVNAFNSGV | |
Retrocopy | GNVFLLK*KYENYFIKAQKVRCLIANDFVNAFNSGV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .06 RPM | 10 .79 RPM |
bodymap2_adrenal | 0 .20 RPM | 31 .38 RPM |
bodymap2_brain | 0 .05 RPM | 17 .23 RPM |
bodymap2_breast | 0 .29 RPM | 15 .25 RPM |
bodymap2_colon | 0 .00 RPM | 14 .27 RPM |
bodymap2_heart | 0 .09 RPM | 23 .46 RPM |
bodymap2_kidney | 0 .00 RPM | 28 .91 RPM |
bodymap2_liver | 0 .06 RPM | 17 .07 RPM |
bodymap2_lung | 0 .00 RPM | 9 .86 RPM |
bodymap2_lymph_node | 0 .00 RPM | 24 .45 RPM |
bodymap2_ovary | 0 .00 RPM | 25 .06 RPM |
bodymap2_prostate | 0 .00 RPM | 15 .61 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 23 .52 RPM |
bodymap2_testis | 0 .00 RPM | 22 .06 RPM |
bodymap2_thyroid | 0 .11 RPM | 25 .82 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 25 .34 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_902 |
Gorilla gorilla | retro_ggor_1031 |
Pongo abelii | retro_pabe_1100 |
Callithrix jacchus | retro_cjac_692 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017557 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001036 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006200 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000021670 | 1 retrocopy | |
Homo sapiens | ENSG00000130348 | 3 retrocopies |
retro_hsap_1321 , retro_hsap_466, retro_hsap_514,
|
Gorilla gorilla | ENSGGOG00000008261 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000008330 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013383 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000016883 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000018462 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .07 RPM |
CEU_NA12760 | 0 .09 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .06 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .06 RPM |
FIN_HG00349 | 0 .06 RPM |
FIN_HG00375 | 0 .05 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .05 RPM |
GBR_HG00131 | 0 .09 RPM |
GBR_HG00133 | 0 .14 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .06 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .06 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .08 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .06 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .08 RPM |
YRI_NA19118 | 0 .04 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .08 RPM |