RetrogeneDB ID: | retro_mmul_675 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1099214275152:8..830(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.310 | ||
Ensembl ID: | ENSMMUG00000008330 | ||
Aliases: | None | ||
Description: | glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 [Source:RefSeq peptide;Acc:NP_001244430] |
Percent Identity: | 80.73 % |
Parental protein coverage: | 52.08 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | PWSYSKQYREKRKQNPHSKNEDSDWLITGGSSGGSAAAVSAFTCYAALGSDTGGSTRNPAAHCGLVGFKP |
PWSYSKQYREKRK.N.H..NEDSDWLITG.SSGGSA.AVSAFTCYAALGS.TGG..RNPAA.CGLVGFKP | |
Retrocopy | PWSYSKQYREKRK*NLHFENEDSDWLITGRSSGGSAVAVSAFTCYAALGSYTGGLIRNPAAYCGLVGFKP |
Parental | SYGLVSRHGLIPLVNSMDVPGILTRCVDDAAIVLGALAGPDPKDSTTVHDPINKPFMLPSLADVSKLCIG |
S.GLV..HGLI...N.MDV.G.LTR.VDDAAIVLG.LAG.DPKDSTTV.DP..KPFMLPSL..VSKLCIG | |
Retrocopy | SCGLVFHHGLISPENLMDVQGLLTRYVDDAAIVLGVLAGHDPKDSTTVQDPV-KPFMLPSLTNVSKLCIG |
Parental | IPKEYLIPELSSEVRSLWSKAADLFESEGAKVLEVSLPHTSYSIVCYHVLCTSEVASNMARFDGLQYGHR |
IPKEYL..ELSSE..SLWSKAADLFESEG.KV.EVS..H..YSIVCYH.LC.SE.AS..ARFDGLQYGHR | |
Retrocopy | IPKEYLVLELSSEEPSLWSKAADLFESEGIKVTEVSFSHFTYSIVCYHLLCISEAASSIARFDGLQYGHR |
Parental | CDINVSTEAMYAATRREGFNDVVRGRILSGNFFLLKENYENYFVKAQKVRRLIANDFVNAFNSGV |
CDI.VSTEAM..ATR.EGFND.VRGRILSGN.FLL...YENYF.KAQKVR.LIANDFVNAFNSGV | |
Retrocopy | CDIDVSTEAMDVATR*EGFNDFVRGRILSGNVFLLT*KYENYFIKAQKVRCLIANDFVNAFNSGV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 15 .80 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 16 .34 RPM |
SRP007412_cerebellum | 0 .13 RPM | 14 .46 RPM |
SRP007412_heart | 0 .00 RPM | 18 .08 RPM |
SRP007412_kidney | 0 .12 RPM | 32 .04 RPM |
SRP007412_liver | 0 .00 RPM | 14 .73 RPM |
SRP007412_testis | 0 .00 RPM | 6 .37 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017557 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001036 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006200 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000021670 | 1 retrocopy | |
Homo sapiens | ENSG00000130348 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000008261 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000008330 | 2 retrocopies |
retro_mmul_429, retro_mmul_675 ,
|
Nomascus leucogenys | ENSNLEG00000013383 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000016883 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000018462 | 2 retrocopies |