RetrogeneDB ID: | retro_ggor_474 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:202609408..202610371(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | QRSL1 | ||
Ensembl ID: | ENSGGOG00000008261 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.82 % |
Parental protein coverage: | 61.17 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | VGFKPSYGLVSRHGLIPLVNSMDVPGILTRCVDDAAIVLGALAGPDPRDSTTVHDPINKPFMLPSLADVS |
VGFKPSYGL.SRHGLIPLVN.MD.PGILTRCVDDAAIVLG.LAG.D..DSTTV.DP..KPF.LPSL.DV. | |
Retrocopy | VGFKPSYGLLSRHGLIPLVNLMDLPGILTRCVDDAAIVLGVLAGHDLKDSTTVQDPV-KPFILPSLTDVN |
Parental | KLCIGIPKEYLVPELS-SEVQSLWSKAADLFESEGAKVIEVSLPHTSYSIVCYHVLCTSEVASNMARFDG |
KLC.GI....LVP.LS.SEVQSLWSKAADLF.S..AK.IE.SLPHTSYS.VCYHVLCT.EVASNMARFDG | |
Retrocopy | KLCTGIXXXXLVP*LS<SEVQSLWSKAADLFVSARAKIIEASLPHTSYSVVCYHVLCTLEVASNMARFDG |
Parental | LQYGHRCDIDVSTEAMYAATRREGFNDVVRGRILSGNFF-LLKE-NYENYFVKAQKVRRLIANDFINAFN |
L.YGHRCDIDVSTEA.YAATR.EGFNDVVRGRILSGNFF.LLK..NYENYF.K.QKV..LI.NDF.NAFN | |
Retrocopy | LRYGHRCDIDVSTEARYAATRQEGFNDVVRGRILSGNFF<LLKK<NYENYFIKTQKVKYLIDNDFVNAFN |
Parental | SGVDVLLTPTTLSEAVPYLEFIKEDNRTRSAQDDIFTQAVNMAGLPAVSIPVALSNQGLPIGLQFIGRAF |
SGVDVLLTPTTLSEAV.YLEFIKEDN.TRSAQDD.FTQAVNMAGLP.VSIPVALSNQGLP.GL.....AF | |
Retrocopy | SGVDVLLTPTTLSEAVLYLEFIKEDNTTRSAQDDSFTQAVNMAGLPTVSIPVALSNQGLPTGL*LTECAF |
Parental | CDQQLLTVAKWFEKQVQFPVIQLQELMDDCSAVLENEKLASVSLKQ |
CDQQLLT.AK.FEKQVQF.V.QLQELMD.CS..LENEKLASVSLKQ | |
Retrocopy | CDQQLLTIAK*FEKQVQFSVTQLQELMDGCSSILENEKLASVSLKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 7 .48 RPM |
SRP007412_cerebellum | 0 .00 RPM | 7 .72 RPM |
SRP007412_heart | 0 .00 RPM | 4 .47 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .07 RPM |
SRP007412_liver | 0 .00 RPM | 6 .23 RPM |
SRP007412_testis | 0 .00 RPM | 16 .16 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_514 |
Pongo abelii | retro_pabe_230 |
Macaca mulatta | retro_mmul_429 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017557 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001036 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006200 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000021670 | 1 retrocopy | |
Homo sapiens | ENSG00000130348 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000008261 | 3 retrocopies |
retro_ggor_1031, retro_ggor_445, retro_ggor_474 ,
|
Macaca mulatta | ENSMMUG00000008330 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013383 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000016883 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000018462 | 2 retrocopies |