RetrogeneDB ID: | retro_ptro_351 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 1:146831682..146832461(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | QRSL1 | ||
Ensembl ID: | ENSPTRG00000018462 | ||
Aliases: | None | ||
Description: | Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial [Source:UniProtKB/TrEMBL;Acc:H2QTH5] |
Percent Identity: | 80.97 % |
Parental protein coverage: | 50.57 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MLGRSLREVSAALKQGQITPTELCQKCLSLIKKTKFLNAYITVSEEVALKQAEESEKRYKNGQSLGDLDG |
MLGR...EVSAALKQGQITPTELCQKCLSLIKKTKFL.AYITVSEEVALKQA.ESEKRYK..QSLGDLDG | |
Retrocopy | MLGRTP*EVSAALKQGQITPTELCQKCLSLIKKTKFLHAYITVSEEVALKQAKESEKRYKHEQSLGDLDG |
Parental | IPIAVKDNFSTSGIETTCASNMLKGYIPPYNATVVQKLLDQGALLMGKTNLDEFAMGSGSTDGVFGPVKN |
IPIAVKD.FSTSGIETTCASNMLKGY.PPYNA.VV.KLLDQ.ALL.GKTNLDEFA.GSG.TDGVFGPVKN | |
Retrocopy | IPIAVKDTFSTSGIETTCASNMLKGYVPPYNARVVPKLLDQEALLIGKTNLDEFAIGSGGTDGVFGPVKN |
Parental | P-WSYSKQYREKRKQNPHSENEDSDWLITGGSSGGSAAAVSAFTCYAALGSDTGGSTRNPAAHCGLVGFK |
P..SYSK.YREKRKQNPHS.NEDSDWLIT....GGS.....A.....ALGS.TGGSTRNPAAHC..VGFK | |
Retrocopy | P<LSYSK*YREKRKQNPHSKNEDSDWLIT----GGSSGGSAA--AMSALGSATGGSTRNPAAHCRFVGFK |
Parental | PSYGLVSRHGLIPLVNSMDVPGILTRCVDDAAIVLGALAGPDPRDSTTVHEPINKPFM |
PSYGLVS..GLI.LVN.MDVPGILTRCVDDAAIVL...AG.D..D.TTV..PI.KPF. | |
Retrocopy | PSYGLVSHYGLILLVNLMDVPGILTRCVDDAAIVLSVQAGHDTNDCTTV*DPI-KPFI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 9 .19 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .44 RPM |
SRP007412_heart | 0 .00 RPM | 17 .95 RPM |
SRP007412_kidney | 0 .03 RPM | 18 .62 RPM |
SRP007412_liver | 0 .00 RPM | 10 .28 RPM |
SRP007412_testis | 0 .00 RPM | 25 .08 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_466 |
Gorilla gorilla | retro_ggor_445 |
Pongo abelii | retro_pabe_268 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017557 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000001036 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006200 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000021670 | 1 retrocopy | |
Homo sapiens | ENSG00000130348 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000008261 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000008330 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013383 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000016883 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000018462 | 2 retrocopies |
retro_ptro_351 , retro_ptro_902,
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