RetrogeneDB ID: | retro_btau_616 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 16:29369554..29370992(+) | ||
Located in intron of: | ENSBTAG00000016185 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.64411 | ||
Ensembl ID: | ENSBTAG00000017557 | ||
Aliases: | None | ||
Description: | glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial [Source:RefSeq peptide;Acc:NP_001039801] |
Percent Identity: | 74.95 % |
Parental protein coverage: | 92.4 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 13 |
Parental | ITVSEEVALKQAEESEKRYKK-GHSLGDLDGIPIAVKDNFSTSGIETTCASNMLKGYVPP-YNATVVQKL |
.TVSEEV.LKQ..E......K.GHSL..LD.IPIAVKDNFSTSGIETTCASN.LK..V.P..N.T.V... | |
Retrocopy | VTVSEEVVLKQV-EESEKRYK<GHSLWNLDEIPIAVKDNFSTSGIETTCASNILKS*VSP<LNSTEV--- |
Parental | LDQGALLMGK-TNLDEFAMGSGSTDGIFGPVKNPWSYS-KQYREKRKQNSHSENEDSNWLITGGSSGGSA |
...G....GK.TNLDE.AMG..STDGIFGPV.NPWSYS.KQYREKRKQ.SH.EN.DSNWLITGGSSGGSA | |
Retrocopy | VGSGSSVNGK>TNLDESAMGYRSTDGIFGPVINPWSYS<KQYREKRKQKSHGENKDSNWLITGGSSGGSA |
Parental | AAVSAFTCFAALGSDTGGSTRNPAAHCGVVGLKPSYGLVSRHGLIPLVNSM-DVPGILTRCVDDA-ATVL |
.AVSAFTCF.ALG.D..GST.NPAAH...VGLK.SY.LVS.HGLIPLVNSM.DVP.ILTR.VDDA...VL | |
Retrocopy | VAVSAFTCFIALGPDSRGSTSNPAAHYEIVGLKSSYDLVSCHGLIPLVNSM<DVPRILTRGVDDA<TNVL |
Parental | GVLAGHDPKDSTTIQDPV-KPFTLPSLTDVSKLCIGIPKEYLTPELSSEVQSLWSKAANLFESEGAKVTE |
..LAG.D..DSTTIQDPV.KPF.LPSLTD.SK.CIGIPKEYL.PELSSEVQS.WSKAANLFESEGAKV.E | |
Retrocopy | SILAGQDF*DSTTIQDPV>KPFMLPSLTDMSKRCIGIPKEYLIPELSSEVQSFWSKAANLFESEGAKVIE |
Parental | VSLPH-TSY-SIVCYHVLCTSEVASNMARFDGLEYGHRCDSDVSTEAMYAATRREGFNDVVRGRILSGNF |
VSLP..TS..SIVCYHVLCTSEVASNMARFD.LEYGH....DVSTEAMYAAT..E.FN..V.GRILSGN. | |
Retrocopy | VSLPQ<TSF<SIVCYHVLCTSEVASNMARFDRLEYGH*FNIDVSTEAMYAATKQEEFNYLVWGRILSGN- |
Parental | FLLK-ENYENYFVKAQKVRRLIANDFVNVFNSGVDVLLTPTTLSEAVPYTEFIKEDNRTRSAQDDIFTQA |
FL.K.ENYENYF.KA.KVR.LI.NDFVNVFNSGVDVLLT.T.LSEAVPYT..IKEDNRT..AQ.DIFTQ. | |
Retrocopy | FLIK>ENYENYFIKAEKVR*LITNDFVNVFNSGVDVLLTSTALSEAVPYTKCIKEDNRT*IAQGDIFTQT |
Parental | V-NMAGLPAVSVPVALSSQGLPIGLQFIGRAFCDQQL-LIVAKWFEKQVQFPVIQLQELMDDCSSVFENE |
V.NMA.LP.VSVP.ALSSQGL.IGLQF.G..FCDQ.L...V.KWFEKQV.FPV.QL..LMDDCSS..EN. | |
Retrocopy | V<NMAELPMVSVPTALSSQGLSIGLQFNGCTFCDQLL>FTVCKWFEKQVLFPVTQLIKLMDDCSSNCEN* |
Parental | KLA-SVSLK |
.L..S.SLK | |
Retrocopy | TLS<SASLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 12 .98 RPM |
ERP005899_muscle | 0 .00 RPM | 20 .90 RPM |
SRP017611_brain | 0 .00 RPM | 12 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .83 RPM |
SRP017611_liver | 0 .00 RPM | 9 .89 RPM |
SRP030211_testis | 0 .02 RPM | 27 .40 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017557 | 3 retrocopies |
retro_btau_476, retro_btau_493, retro_btau_616 ,
|
Choloepus hoffmanni | ENSCHOG00000001036 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006200 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000021670 | 1 retrocopy | |
Homo sapiens | ENSG00000130348 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000008261 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000008330 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013383 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000016883 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000018462 | 2 retrocopies |