RetrogeneDB ID: | retro_btau_547 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 14:56854032..56854417(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAFAH1B3 | ||
Ensembl ID: | ENSBTAG00000019787 | ||
Aliases: | None | ||
Description: | Platelet-activating factor acetylhydrolase IB subunit gamma [Source:UniProtKB/Swiss-Prot;Acc:Q29460] |
Percent Identity: | 63.08 % |
Parental protein coverage: | 53.88 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VADSKDKEPEVVFIGDSLVQLMHQC-EIWRELFSPLHALNFGIGGDSTQHVLWRL--ENGELEHIRPKIV |
VADSKD.EP.V.FI.DSLVQL..Q..EIW.ELFSPLHAL.FGIG.DSTQH.LW....EN.ELEH.RP... | |
Retrocopy | VADSKDEEP*V-FIRDSLVQLRDQW>EIWQELFSPLHALTFGIGCDSTQHGLWNWENENTELEHLRP*TA |
Parental | VVWVGTNNHGHTAEQVTGGIKAIVQLVNER--QPQARVVVLGLLPRGQHPNPLREKNRRV |
VVWVGTNNHG.T.EQV.G..........ER...P.....VL.LL..GQ.PNPL.EKNR.V | |
Retrocopy | VVWVGTNNHGRTTEQVGGWWHQGHSATGERSGSPRYGLTVLRLLIWGQGPNPLPEKNRQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 0 .58 RPM |
ERP005899_muscle | 0 .00 RPM | 21 .12 RPM |
SRP017611_brain | 0 .00 RPM | 11 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .48 RPM |
SRP017611_liver | 0 .00 RPM | 0 .45 RPM |
SRP030211_testis | 0 .00 RPM | 8 .28 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019787 | 1 retrocopy |
retro_btau_547 ,
|
Canis familiaris | ENSCAFG00000004847 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002870 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012172 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000007574 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000020481 | 1 retrocopy |