RetrogeneDB ID: | retro_cfam_610 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 14:51177177..51177875(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAFAH1B3 | ||
Ensembl ID: | ENSCAFG00000004847 | ||
Aliases: | None | ||
Description: | platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa) [Source:HGNC Symbol;Acc:8576] |
Percent Identity: | 70.94 % |
Parental protein coverage: | 99.57 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | AKMSGEENPASKPT-PVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFSPLHA |
AK.S.EEN....P...V.DVQGD....SL.H.F..DSKDKE.EV.FIGDS.VQLM.QC.IW.ELFSPLHA | |
Retrocopy | AKKSEEENALTSPC<LVWDVQGDRG*ISLNHWFISDSKDKEHEVLFIGDSWVQLMYQCKIWQELFSPLHA |
Parental | LNFGIGSDSTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVQLVNQRQPQARVVVLG |
LNFGIGSD.T..VLW..ENGELE.I.PKI..VWVGTN.H.HT.EQVTGGIK.IVQLV.Q.QPQARV...G | |
Retrocopy | LNFGIGSDNT*QVLWQVENGELEQIQPKIIGVWVGTNHHRHTVEQVTGGIKTIVQLVKQQQPQARVFGAG |
Parental | LLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMYDYLHLSRLGYTPVCRA |
L...GQ.PNPL.EKN...NELV.AALAGHP.AHFLDA..GFVH.DGTISHH.MY.YLHL..LGYT.V... | |
Retrocopy | LVSQGQYPNPLHEKN**MNELVQAALAGHPQAHFLDANSGFVHLDGTISHHGMYEYLHLNHLGYTAVHWD |
Parental | LHSLLLRLLAQDQGQGIPLPEATP |
.HSLLL..LAQD.GQGIPLPEA.P | |
Retrocopy | WHSLLLHMLAQD*GQGIPLPEANP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 63 .38 RPM |
SRP017611_brain | 0 .00 RPM | 10 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .87 RPM |
SRP017611_liver | 0 .00 RPM | 1 .52 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019787 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004847 | 1 retrocopy |
retro_cfam_610 ,
|
Canis familiaris | ENSCAFG00000013226 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002870 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012172 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000007574 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000020481 | 1 retrocopy |