RetrogeneDB ID: | retro_mmul_18 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:117129627..117130323(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000021893 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAFAH1B3 | ||
Ensembl ID: | ENSMMUG00000012172 | ||
Aliases: | None | ||
Description: | platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa) [Source:RefSeq peptide;Acc:NP_001244209] |
Percent Identity: | 99.57 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSREENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFSPLHALNF |
MSREENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFSPLHALNF | |
Retrocopy | MSREENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFSPLHALNF |
Parental | GIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVQLVNERQPQARVVVLGLLP |
GIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVQLVNERQPQARVVVLGLLP | |
Retrocopy | GIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVQLVNERQPQARVVVLGLLP |
Parental | RGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMYDYLHLSRLGYTPVCRALHS |
RGQHPNPL.EKNRRVNELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMYDYLHLSRLGYTPVCRALHS | |
Retrocopy | RGQHPNPLGEKNRRVNELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMYDYLHLSRLGYTPVCRALHS |
Parental | LLLRLLAQDQGQGAPLLEPAP |
LLLRLLAQDQGQGAPLLEPAP | |
Retrocopy | LLLRLLAQDQGQGAPLLEPAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 3 .92 RPM |
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 23 .01 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .87 RPM |
SRP007412_heart | 0 .00 RPM | 0 .82 RPM |
SRP007412_kidney | 0 .00 RPM | 2 .23 RPM |
SRP007412_liver | 0 .00 RPM | 2 .06 RPM |
SRP007412_testis | 0 .00 RPM | 2 .60 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019787 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004847 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002870 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002050 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000012172 | 1 retrocopy |
retro_mmul_18 ,
|
Mustela putorius furo | ENSMPUG00000007574 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000020481 | 1 retrocopy |