RetrogeneDB ID: | retro_mputfur_351 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896904.1:25656976..25657328(-) | ||
Located in intron of: | ENSMPUG00000007775 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAFAH1B3 | ||
Ensembl ID: | ENSMPUG00000007574 | ||
Aliases: | None | ||
Description: | platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa) [Source:HGNC Symbol;Acc:8576] |
Percent Identity: | 65.29 % |
Parental protein coverage: | 51.08 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | SKPTPVQDVQGDGRWMSLH-HRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFSPLHALNFGIGSDST |
SK...VQD.Q..G..MSLH...F.A.SKDKE..V.....S.V.LMHQC.IWRELF..LH.LNFGIGSD.. | |
Retrocopy | SKSLRVQDMQDNGH*MSLH<PGFIAHSKDKEHKVFLLRNSWVHLMHQCKIWRELFYSLHILNFGIGSDT* |
Parental | QHVLWRLEN-GELEHIRPKIVVVW-VGTNNHGHTAEQVTGGIKAIVDLVNQ |
Q.VLW.LEN.GELE.I.PK.VVVW.V.TN.H.H.AEQVTGGI..IV.LVNQ | |
Retrocopy | Q-VLWQLEN>GELEQIWPKTVVVW>VSTNHHRHIAEQVTGGIETIVQLVNQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019787 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004847 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002870 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012172 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004246 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000007574 | 1 retrocopy |
retro_mputfur_351 ,
|
Rattus norvegicus | ENSRNOG00000020481 | 1 retrocopy |