RetrogeneDB ID: | retro_btau_686 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 17:65539412..65539766(-) | ||
Located in intron of: | ENSBTAG00000014376 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2AFV | ||
Ensembl ID: | ENSBTAG00000016975 | ||
Aliases: | None | ||
Description: | Histone H2A.V [Source:UniProtKB/Swiss-Prot;Acc:Q32LA7] |
Percent Identity: | 78.81 % |
Parental protein coverage: | 92.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELA |
MA.GKAGKDSGKA..KA.S..QRA.LQF...RIH..LK.RTTSHG.V..TAAV.S.AILE.LTAEVLELA | |
Retrocopy | MADGKAGKDSGKANTKALSHLQRASLQFLGDRIHPYLKSRTTSHGCVDVTAAVCSTAILEDLTAEVLELA |
Parental | GNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSL |
GNAS.DLKVK.ITPRHLQLAIRGDEELDS.IKAT.AGG.V.PHIHKSL | |
Retrocopy | GNASEDLKVKCITPRHLQLAIRGDEELDSRIKATVAGGDVSPHIHKSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 24 .80 RPM |
ERP005899_muscle | 0 .05 RPM | 101 .99 RPM |
SRP017611_brain | 0 .05 RPM | 13 .89 RPM |
SRP017611_kidney | 0 .06 RPM | 37 .64 RPM |
SRP017611_liver | 0 .08 RPM | 12 .99 RPM |
SRP030211_testis | 0 .04 RPM | 77 .24 RPM |