Parental gene: | H2AFV, ENSOCUG00000008133 |
| Aliases: | None |
| Description: | H2A histone family, member V (H2AFV), mRNA [Source:RefSeq mRNA;Acc:NM_001170941] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 10:45153370..45160938(-) |
>ENSOCUG00000008133
ATGCAGGCTGGAGGCAAAGCTGGGAAGGACAGCGGGAAGGCCAAGGCCAAGGCAGTGTCTCGCTCACAGAGGGCTGGGCT
GCAGTTTCCCGTGGGCCGCATCCACAGACACTTGAAGACTCGCACCACGAGCCATGGAAGGGTGGGTGCCACTGCTGCCG
TGTACAGTGCTGCAATTCTGGAGTACCTCACTGCTGAGGTACTGGAGCTGGCAGGTAACGCTTCCAAGGATCTCAAAGTA
AAGCGTATCACTCCACGTCACTTGCAGCTTGCAATCCGTGGTGATGAAGAATTGGATTCTCTTATCAAGGCTACCATAGC
TGGGGGTGGTGTGATCCCTCACATCCACAAATCTCTGATTGGAAAGAAGGGACAACAGAAAACTGCTTAG
ATGCAGGCTGGAGGCAAAGCTGGGAAGGACAGCGGGAAGGCCAAGGCCAAGGCAGTGTCTCGCTCACAGAGGGCTGGGCT
GCAGTTTCCCGTGGGCCGCATCCACAGACACTTGAAGACTCGCACCACGAGCCATGGAAGGGTGGGTGCCACTGCTGCCG
TGTACAGTGCTGCAATTCTGGAGTACCTCACTGCTGAGGTACTGGAGCTGGCAGGTAACGCTTCCAAGGATCTCAAAGTA
AAGCGTATCACTCCACGTCACTTGCAGCTTGCAATCCGTGGTGATGAAGAATTGGATTCTCTTATCAAGGCTACCATAGC
TGGGGGTGGTGTGATCCCTCACATCCACAAATCTCTGATTGGAAAGAAGGGACAACAGAAAACTGCTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 8 .48 RPM |
| SRP017611_kidney | 30 .91 RPM |
| SRP017611_brain | 19 .43 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000016975 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000000889 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000011953 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000000769 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000000793 | ortholog_one2one | 5 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000015817 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000010271 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000105968 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000014500 | ortholog_one2many | 2 retrogenes | |
| Mus musculus | ENSMUSG00000041126 | ortholog_one2one | 2 retrogenes | |
| Ornithorhynchus anatinus | ENSOANG00000009378 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000001888 | within_species_paralog | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000025145 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000015604 | ortholog_one2one | 3 retrogenes | |
| Pelodiscus sinensis | ENSPSIG00000005931 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000019153 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000001109 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000007026 | ortholog_one2one | 5 retrogenes | |
| Sus scrofa | ENSSSCG00000016738 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000011533 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000013840 | ortholog_one2one | 5 retrogenes | |
| Vicugna pacos | ENSVPAG00000004507 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_385 | 65.38 | 98.45 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_389 | 75.65 | 87.60 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_523 | 64.57 | 96.90 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ocun_601 | 70.64 | 82.95 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ocun_778 | 60.19 | 82.95 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ocun_1226 | 76.92 | 89.92 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ocun_1336 | 70.71 | 74.42 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ocun_1456 | 64.29 | 74.42 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ocun_1596 | 52.04 | 75.97 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_ocun_1938 | 74.05 | 98.45 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000008133 retrocopies