RetrogeneDB ID: | retro_ocun_1226 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 4:24903527..24903874(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000017324 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2AFV | ||
Ensembl ID: | ENSOCUG00000008133 | ||
Aliases: | None | ||
Description: | H2A histone family, member V (H2AFV), mRNA [Source:RefSeq mRNA;Acc:NM_001170941] |
Percent Identity: | 76.92 % |
Parental protein coverage: | 89.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GKDSGKAKAKAVSRSQRAGLQF-PVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK |
GKDS.KAK.KAVS..QR.GLQF.P.GR.H.HL...TTSH..VGATAAVYSAAI.EYLTAEVLELAGNA.. | |
Retrocopy | GKDSRKAKTKAVSCLQRVGLQF<PGGRVHPHLQSTTTSHDLVGATAAVYSAAIQEYLTAEVLELAGNATE |
Parental | DLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK |
D.KV.RIT.RHLQLAI.GDEELDSL.KATIA..GVIPHI.K.LIGK. | |
Retrocopy | DSKVRRITSRHLQLAIHGDEELDSLNKATIASDGVIPHIQKPLIGKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 19 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 30 .91 RPM |
SRP017611_liver | 0 .00 RPM | 8 .48 RPM |