RetrogeneDB ID: | retro_ocun_389 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:130671571..130671910(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2AFV | ||
Ensembl ID: | ENSOCUG00000008133 | ||
Aliases: | None | ||
Description: | H2A histone family, member V (H2AFV), mRNA [Source:RefSeq mRNA;Acc:NM_001170941] |
Percent Identity: | 75.65 % |
Parental protein coverage: | 87.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAG |
AGG.AGKDSGKA.A.AVS.SQRAGLQFP.G.IH.HLK.R..SHGRVG.T.AVYSAAILEYLT.EVLELAG | |
Retrocopy | AGGEAGKDSGKASAYAVSCSQRAGLQFPLGHIH*HLKSRRPSHGRVGVTTAVYSAAILEYLTTEVLELAG |
Parental | NASKDLKVKRITPRHLQLAIRGDEEL-DSLIKATI-AGGGVIPHI |
N.S.DLKVK.ITP.HLQLAIRGDEE..D..IK.T....GGVIP.. | |
Retrocopy | NSSSDLKVKHITPPHLQLAIRGDEEF>DCPIKTTV<CAGGVIPQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 19 .43 RPM |
SRP017611_kidney | 0 .61 RPM | 30 .91 RPM |
SRP017611_liver | 0 .00 RPM | 8 .48 RPM |