RetrogeneDB ID: | retro_oana_87 | ||
Retrocopylocation | Organism: | Platypus (Ornithorhynchus anatinus) | |
Coordinates: | Contig54011:600..846(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2AFV | ||
Ensembl ID: | ENSOANG00000009378 | ||
Aliases: | None | ||
Description: | H2A histone family, member V [Source:HGNC Symbol;Acc:20664] |
Percent Identity: | 80.95 % |
Parental protein coverage: | 62.99 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | GRVG-ATAAVYSA-AILEYLTAE-VLELAGNASKDLKVKRITPR-HLQLAIRGDEELDSLIKATIAGGGV |
GRVG.....VY...AILEYLTAE.VLELAGNASKDLKVKRITPR.HLQLAIRGDEELD.LIKATIAGGGV | |
Retrocopy | GRVGFPQLRVYAS>AILEYLTAE>VLELAGNASKDLKVKRITPR>HLQLAIRGDEELDTLIKATIAGGGV |
Parental | IPHIHKSLIGKKGQ |
IPHIHK.L..K..Q | |
Retrocopy | IPHIHKALMNKGPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 54 .75 RPM |
SRP007412_cerebellum | 0 .00 RPM | 73 .59 RPM |
SRP007412_heart | 0 .00 RPM | 131 .15 RPM |
SRP007412_kidney | 0 .00 RPM | 86 .16 RPM |
SRP007412_liver | 0 .00 RPM | 31 .55 RPM |
SRP007412_testis | 0 .00 RPM | 121 .69 RPM |