RetrogeneDB ID: | retro_dord_195 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_5118:549..908(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2afv | ||
Ensembl ID: | ENSDORG00000000793 | ||
Aliases: | None | ||
Description: | H2A histone family, member V [Source:MGI Symbol;Acc:MGI:1924855] |
Percent Identity: | 77.17 % |
Parental protein coverage: | 99.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AGGKAGKDSGKAKAKAVSRSQRA-GLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELA |
AGGKAGKDSG..KAK....S....GLQF.VGRIH.HLK.RTTSHGRVGATAAVY....LEY..A..LELA | |
Retrocopy | AGGKAGKDSG--KAKTKAVSCSS<GLQFSVGRIHQHLKSRTTSHGRVGATAAVY----LEYRIADMLELA |
Parental | GNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKT |
GNAS..LKVK.ITPRHLQL.I.GDEELDSLIKATIA.G.VIPHIHKS.IGKKGQQKT | |
Retrocopy | GNASQELKVKLITPRHLQLDIHGDEELDSLIKATIACGDVIPHIHKSFIGKKGQQKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |