RetrogeneDB ID: | retro_btau_766 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 19:47352256..47352698(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDFIP1 | ||
Ensembl ID: | ENSBTAG00000047747 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.08 % |
Parental protein coverage: | 70.09 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | TTLPSYDEAERTKAEATIPLVPGRDEEFAGREEFDDPDQMRIGNDGIFMLTF-FMAF-LFNWIGFFLSFC |
TTLPSYDE..R.K.E.TIP.V.GRDE.F.G...FD..DQ...GN..IFM.TF.FMAF.L.N.IG.FLS.. | |
Retrocopy | TTLPSYDEGKRIKHETTIPSVSGRDEYFVGQDDFDNADQLSLGNNRIFM*TF<FMAF<L*N*IGYFLSAF |
Parental | LTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLFLRGFINYAKVRKMPEN |
L.TS.AG.Y.AISGFGLSLIK.IL.VRFSTYFPGYFDGQ..LWWVFLVLGFLLFLRGF.NYAKV.K.... | |
Retrocopy | LATSTAGKYEAISGFGLSLIKQILVVRFSTYFPGYFDGQNCLWWVFLVLGFLLFLRGFVNYAKVWKI*K- |
Parental | FSNLPRTRVLFI |
...L...RVLFI | |
Retrocopy | -LKLLQDRVLFI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 109 .08 RPM |
ERP005899_muscle | 0 .00 RPM | 59 .60 RPM |
SRP017611_brain | 0 .00 RPM | 310 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 193 .23 RPM |
SRP017611_liver | 0 .00 RPM | 34 .66 RPM |
SRP030211_testis | 0 .03 RPM | 29 .85 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000047747 | 1 retrocopy |
retro_btau_766 ,
|
Callithrix jacchus | ENSCJAG00000018271 | 1 retrocopy | |
Equus caballus | ENSECAG00000021907 | 1 retrocopy | |
Homo sapiens | ENSG00000131507 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004879 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016787 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015896 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017358 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002466 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025295 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000005153 | 1 retrocopy |