Parental gene:

ENSSSCG00000025295

Aliases:None
Description:Sus scrofa Nedd4 family interacting protein 1 (NDFIP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001243361]
Organism:Pig (Sus scrofa)
Coordinates:GL894376.2:8911..29271(-)


>ENSSSCG00000025295
TTGCAGAATGAAGAAGAGCCTGGAGAGCCGGAGCAGGCTGCAGGGGACGCTCCGCCGCCTTATAGCAGCATCTCTGCCGA
GAGCGCCGTGTATTTTGACTACAAAGACGAGTCTGGGTTTCCAAAGCCCCCATCTTACAACGTGGCTACCACACTGCCCA
GTTACGACGAAGCCGAGAGAACCAAAGCCGAAGCTACTATCCCTTTGGTTCCTGGAAGAGATGAAGATTTTGTGGGTCGG
GATGATTTCGATGATGCTGACCAGATGAGGATAGGAAACGACGGGGTTTTCATGTTGACTTTTTTCATGGCATTCCTCTT
TAACTGGATTGGATTTTTCCTGTCTTTTTGCCTGACCACCTCAGCGGCGGGAAGATACGGGGCCATTTCAGGATTTGGTC
TCTCTCTAATTAAGTGGATCCTGATTGTCAGATTTTCCACCTATTTCCCTGGATATTTTGATGGTCAGTACTGGCTCTGG
TGGGTGTTCCTGGTTTTAGGATTTCTCCTGTTTCTCAGAGGATTTATCAATTATGCGAAGGTTCGGAAGATGCCAGAAAC
GTTCTCCAATCTCCCCAGGACCAGAGTTCTCTTTATTTATTGA

Library Parental gene expression (RPM)
SRP014902_placenta 58 .53 RPM
SRP014902_testis 138 .48 RPM
SRP018856_adipose 114 .73 RPM
SRP018288_kidney 127 .17 RPM
SRP018288_lung 61 .60 RPM
SRP018288_liver 96 .91 RPM
SRP018288_heart 58 .62 RPM
SRP035408_liver 105 .80 RPM
SRP035408_brain 843 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000047747 ortholog_one2many 1 retrogene
retro_btau_766,
Callithrix jacchus ENSCJAG00000018271 ortholog_one2many 1 retrogene
retro_cjac_3175,
Equus caballus ENSECAG00000021907 ortholog_one2many 1 retrogene
retro_ecab_261,
Homo sapiens ENSG00000131507 ortholog_one2many 1 retrogene
retro_hsap_1091,
Gorilla gorilla ENSGGOG00000004879 ortholog_one2many 1 retrogene
retro_ggor_859,
Macaca mulatta ENSMMUG00000016787 ortholog_one2many 1 retrogene
retro_mmul_846,
Pongo abelii ENSPPYG00000015896 ortholog_one2many 1 retrogene
retro_pabe_908,
Pan troglodytes ENSPTRG00000017358 ortholog_one2many 1 retrogene
retro_ptro_743,
Sarcophilus harrisii ENSSHAG00000002466 ortholog_one2many 1 retrogene
retro_shar_738,
Ictidomys tridecemlineatus ENSSTOG00000005153 ortholog_one2many 1 retrogene
retro_itri_1454,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_301 67.35 96.00
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Download FASTA sequences of all ENSSSCG00000025295 retrocopies