RetrogeneDB ID: | retro_hsap_1091 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 12:18511565..18511901(-) | ||
Located in intron of: | ENSG00000139144 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000255892 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDFIP1 | ||
Ensembl ID: | ENSG00000131507 | ||
Aliases: | NDFIP1, N4WBP5 | ||
Description: | Nedd4 family interacting protein 1 [Source:HGNC Symbol;Acc:17592] |
Percent Identity: | 66.96 % |
Parental protein coverage: | 51.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MALALAALAAVEPACGSRYQQLQNEEESGEPEQAAGDAPPPYSSISAESAAY-FDYKDESGFPKPPSYNV |
M.LAL.A..AVE..C.S.YQ.L.NEEE..EPE.A.G..PPPY...SAES..Y.FDY.DES.FPKPP.YNV | |
Retrocopy | MELALVAPVAVELVCSSKYQHL*NEEEPEEPEKASGEVPPPYGINSAESMVY<FDYTDESNFPKPPFYNV |
Parental | AT-TLPSYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIG |
...TLP.Y....R.KAEA...LVPGRDEDFVG.DDFDDADQLRIG | |
Retrocopy | VA>TLPIYNKVMRIKAEA-LSLVPGRDEDFVGQDDFDDADQLRIG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 140 .26 RPM |
bodymap2_adrenal | 0 .00 RPM | 97 .05 RPM |
bodymap2_brain | 0 .00 RPM | 550 .00 RPM |
bodymap2_breast | 0 .00 RPM | 177 .26 RPM |
bodymap2_colon | 0 .00 RPM | 136 .59 RPM |
bodymap2_heart | 0 .00 RPM | 105 .95 RPM |
bodymap2_kidney | 0 .00 RPM | 252 .32 RPM |
bodymap2_liver | 0 .02 RPM | 149 .64 RPM |
bodymap2_lung | 0 .00 RPM | 174 .58 RPM |
bodymap2_lymph_node | 0 .00 RPM | 120 .11 RPM |
bodymap2_ovary | 0 .00 RPM | 181 .24 RPM |
bodymap2_prostate | 0 .00 RPM | 218 .06 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 71 .13 RPM |
bodymap2_testis | 0 .00 RPM | 189 .62 RPM |
bodymap2_thyroid | 0 .00 RPM | 435 .74 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 215 .98 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_743 |
Gorilla gorilla | retro_ggor_859 |
Pongo abelii | retro_pabe_908 |
Macaca mulatta | retro_mmul_846 |
Callithrix jacchus | retro_cjac_3175 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000047747 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018271 | 1 retrocopy | |
Equus caballus | ENSECAG00000021907 | 1 retrocopy | |
Homo sapiens | ENSG00000131507 | 1 retrocopy |
retro_hsap_1091 ,
|
Gorilla gorilla | ENSGGOG00000004879 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016787 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015896 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017358 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002466 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025295 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000005153 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |