RetrogeneDB ID: | retro_shar_738 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL861664.1:298817..299204(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDFIP1 | ||
Ensembl ID: | ENSSHAG00000002466 | ||
Aliases: | None | ||
Description: | Nedd4 family interacting protein 1 [Source:HGNC Symbol;Acc:17592] |
Percent Identity: | 65.89 % |
Parental protein coverage: | 60.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RDDDFVARDDF---DDADQLRIGNDGIFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSLIKW |
R.DDF..RDD.....D.DQLR.GNDGIF...FFMAF.FNW.GF.LSFC.T.S.AGRYGA..G.GLSL.KW | |
Retrocopy | REDDFAPRDDSAASSDSDQLRVGNDGIFLVAFFMAFIFNWVGFCLSFCTTNSIAGRYGALCGLGLSLTKW |
Parental | ILIVRFSTYFPGYFDGQYWLWWVFLILGFLLFLRGFINYAKVRKMPDTFSTLPRTRVLF |
ILIVRFS.YF.GYF.GQYWLWW.FL..G.LLF.RGF..Y.KVR.M.....T..RTR..F | |
Retrocopy | ILIVRFSDYFTGYFNGQYWLWWLFLLIGLLLFFRGFYCYLKVRNMSERLATASRTRFIF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000047747 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018271 | 1 retrocopy | |
Equus caballus | ENSECAG00000021907 | 1 retrocopy | |
Homo sapiens | ENSG00000131507 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004879 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016787 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015896 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017358 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002466 | 1 retrocopy |
retro_shar_738 ,
|
Sus scrofa | ENSSSCG00000025295 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000005153 | 1 retrocopy |