RetrogeneDB ID: | retro_itri_1454 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393493.1:588001..588425(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000023848 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDFIP1 | ||
Ensembl ID: | ENSSTOG00000005153 | ||
Aliases: | None | ||
Description: | Nedd4 family interacting protein 1 [Source:HGNC Symbol;Acc:17592] |
Percent Identity: | 88.03 % |
Parental protein coverage: | 63.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIFMLTFFMAFLFNWIGFFLSFCLTTSAAGRYGAI |
R.KAEATIPLV.GRDEDF.GRDDFDDA.QLRIG.DG.FMLTFFMAF.FNWI.FFLSFCLTTSAAGRY.A. | |
Retrocopy | RLKAEATIPLVSGRDEDFMGRDDFDDAEQLRIGSDGTFMLTFFMAFVFNWIEFFLSFCLTTSAAGRYEAF |
Parental | SGFGLSLIKWILIVRFSTYFPGYFDG-QYWLWWVFLVLGFLLFLRGFINYAKVRKMPETFSNLPRTRVLF |
SGFGLS.IKWILIV.FSTYFPGYFDG.QYW.WWVFLVLG.LLFLRGF.NYAKVRKMPETFSNLPRTRVLF | |
Retrocopy | SGFGLSPIKWILIVKFSTYFPGYFDG>QYWFWWVFLVLGSLLFLRGFVNYAKVRKMPETFSNLPRTRVLF |
Parental | IY |
.Y | |
Retrocopy | TY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000047747 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018271 | 1 retrocopy | |
Equus caballus | ENSECAG00000021907 | 1 retrocopy | |
Homo sapiens | ENSG00000131507 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004879 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016787 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015896 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017358 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002466 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025295 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000005153 | 1 retrocopy |
retro_itri_1454 ,
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