RetrogeneDB ID: | retro_cfam_1134 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 24:28965213..28966389(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000030062 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SMARCE1 | ||
Ensembl ID: | ENSCAFG00000016025 | ||
Aliases: | None | ||
Description: | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:HGNC Symbol;Acc:11109] |
Percent Identity: | 96.18 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MPSTPGFVGYNPYSHLAYNNYRLGGNPGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASN |
MPSTPGFVGYNPYSHL.YNNYRLGGNPGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASN | |
Retrocopy | MPSTPGFVGYNPYSHLTYNNYRLGGNPGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASN |
Parental | PDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESR |
PDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLA.INAKSRAEAALEEES. | |
Retrocopy | PDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLACINAKSRAEAALEEESQ |
Parental | QRQSRMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLK |
QRQSRMEKGEPYMSIQPAEDPDDYDDGFSMKHTATA.FQRNHRLISEILSESVVPDVRSVVTTARMQVLK | |
Retrocopy | QRQSRMEKGEPYMSIQPAEDPDDYDDGFSMKHTATAHFQRNHRLISEILSESVVPDVRSVVTTARMQVLK |
Parental | RQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDMEKIAAEIAQAEEQARK |
RQVQSLMVHQ.KLEAELLQIEE.HQEKKRKFLESTDSF.NELK.LCGLKVEVDMEK.AAEIAQAEEQARK | |
Retrocopy | RQVQSLMVHQ*KLEAELLQIEEQHQEKKRKFLESTDSFKNELKMLCGLKVEVDMEKVAAEIAQAEEQARK |
Parental | RQEEREKEAAEQAERSQSSMVPEEEPAASKTQEKKDDESIPMETEETHLEEATESQQNGEEGTSTPEDKE |
RQEEREKEAAEQAERSQSSMVPEEEPAASKTQE.KDDESIPMETEETHLEEATES.QNGEEG.STPEDKE | |
Retrocopy | RQEEREKEAAEQAERSQSSMVPEEEPAASKTQE-KDDESIPMETEETHLEEATES*QNGEEGSSTPEDKE |
Parental | SGQEGVDSMAEEGTSDSNTGSESNSATVEEPPTDPTPEDEKKE |
SGQEGVDSMAEEGTSDS.T.SESN.ATVEEPPTDPTPEDEKKE | |
Retrocopy | SGQEGVDSMAEEGTSDSKTVSESNGATVEEPPTDPTPEDEKKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 3 .07 RPM | 32 .51 RPM |
SRP017611_brain | 0 .32 RPM | 11 .04 RPM |
SRP017611_kidney | 0 .92 RPM | 21 .59 RPM |
SRP017611_liver | 0 .36 RPM | 7 .03 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000016025 | 8 retrocopies |
retro_cfam_1057, retro_cfam_1131, retro_cfam_1134 , retro_cfam_1300, retro_cfam_1412, retro_cfam_1803, retro_cfam_2063, retro_cfam_2127,
|
Choloepus hoffmanni | ENSCHOG00000008727 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000013573 | 4 retrocopies | |
Felis catus | ENSFCAG00000009646 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000011803 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000004005 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000014660 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008981 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008456 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000010676 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000013885 | 1 retrocopy |