RetrogeneDB ID: | retro_fcat_513 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:18644608..18645281(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SMARCE1 | ||
Ensembl ID: | ENSFCAG00000009646 | ||
Aliases: | None | ||
Description: | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:HGNC Symbol;Acc:11109] |
Percent Identity: | 63.88 % |
Parental protein coverage: | 54.07 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | TERPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYRLGGNPGTNSRVTASSGITIPKPPKPPDKPLM |
..R.SYA..PTPAP.TQMP.TPGFVG......L.YN.Y.LGGN.GTNS.V.ASSG.TIP.PPKPP.K.LM | |
Retrocopy | SKRASYASTPTPAPTTQMPRTPGFVGIQYIQALPYN-YKLGGNLGTNSQVSASSGVTIPQPPKPPHKLLM |
Parental | PYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLA |
PYMR...K.W.QV.AS.PDLKL..IG.I.GGM..D.TDEEK.EY.N.YE..K.E.NES.K.Y.NSP...A | |
Retrocopy | PYMRHGTKFWNQVNASSPDLKLQAIGQINGGML*DFTDEEK*EYSNKYEV*KTE*NESTKDYCNSPTRPA |
Parental | YINAKS-RAEAALEEESRQRQSRMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSES |
YIN.K.....A..EE....R.S.M..GEPY....PAED.DDYDDGFS.KHTATA.FQRN...ISEILS.S | |
Retrocopy | YINTKT>ADTALEEESGQRR-SHMDQGEPYVRTEPAEDADDYDDGFSLKHTATALFQRNYSVISEILSGS |
Parental | VVPDVRSVVTTARMQVL |
VVPD...VVTTAR.QV. | |
Retrocopy | VVPDIQTVVTTARTQVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 31 .95 RPM |
SRP017611_liver | 0 .00 RPM | 17 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000016025 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000008727 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000013573 | 4 retrocopies | |
Felis catus | ENSFCAG00000009646 | 2 retrocopies |
retro_fcat_234, retro_fcat_513 ,
|
Gorilla gorilla | ENSGGOG00000011803 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000004005 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000014660 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008981 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008456 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000010676 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000013885 | 1 retrocopy |