RetrogeneDB ID: | retro_fcat_234 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:59626952..59627585(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SMARCE1 | ||
Ensembl ID: | ENSFCAG00000009646 | ||
Aliases: | None | ||
Description: | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:HGNC Symbol;Acc:11109] |
Percent Identity: | 68.66 % |
Parental protein coverage: | 50.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | TERPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYRLGGNPGTNSR-VTASSGITIP-KPPKPPDKP |
..RPSYAP.PTPA..T.MPS.PGFVG.NPYSHL.YNN...GGNPGTN.R...ASSGIT.P.K..KPPDKP | |
Retrocopy | SKRPSYAPLPTPATSTHMPSRPGFVGCNPYSHLPYNNCSPGGNPGTNAR<AMASSGITTP<KLSKPPDKP |
Parental | LMPYMRYSRKVWDQVKASNPDLKLWE-IGKIIGGMWRDL-TDEEKQEYLNEYEAEKIEYNESMKAYHNSP |
LM.Y.RYSRKVWD..KA.N.DLK..E.IGK.I.GMWRDL...E...EY...Y.AEK.EYNES.KAYH.SP | |
Retrocopy | LMAYVRYSRKVWDRGKAFNHDLKFRE>IGKVISGMWRDL>DEEKQ-EYVDKYKAEK-EYNESVKAYHISP |
Parental | AYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEIL |
.Y.AYIN.....EA.LE.ES.QRQS.M.KG.PYMSIQPA.DP...DDGFS.K.TAT..FQRNH.LI.EIL | |
Retrocopy | QYTAYINVQGCTEASLEKESQQRQSCMAKGKPYMSIQPAKDPENQDDGFSGKYTATVHFQRNHCLICEIL |
Parental | SESVVPD |
SESVV.D | |
Retrocopy | SESVVFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 31 .95 RPM |
SRP017611_liver | 0 .00 RPM | 17 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000016025 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000008727 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000013573 | 4 retrocopies | |
Felis catus | ENSFCAG00000009646 | 2 retrocopies |
retro_fcat_234 , retro_fcat_513,
|
Gorilla gorilla | ENSGGOG00000011803 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000004005 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000014660 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008981 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008456 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000010676 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000013885 | 1 retrocopy |