RetrogeneDB ID: | retro_cfam_1304 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 29:12702931..12703280(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHMP4B | ||
Ensembl ID: | ENSCAFG00000007478 | ||
Aliases: | None | ||
Description: | charged multivesicular body protein 4B [Source:HGNC Symbol;Acc:16171] |
Percent Identity: | 72.88 % |
Parental protein coverage: | 52.23 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | STIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQ-ELAEEISTAISKPVGF |
.T.EFQ.EALENANT.TEVL.NMGY..KAMK.A.DNMD.D...ELMQ..ADQQ...AEEIST.IS.PVGF | |
Retrocopy | ATMEFQ*EALENANTDTEVL*NMGYSSKAMKVAQDNMDTDQDEELMQAMADQQ>HEAEEISTGISNPVGF |
Parental | GEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSITLPSKP |
GEEFD.DEL.AE..EL..EELD.NLL.ISGPE.VPLPNVP..TLPS.P | |
Retrocopy | GEEFDQDELLAE-*ELQ*EELDRNLLQISGPEPVPLPNVPFLTLPSNP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 121 .17 RPM |
SRP017611_brain | 0 .00 RPM | 122 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 80 .17 RPM |
SRP017611_liver | 0 .00 RPM | 20 .59 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009038 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000007478 | 1 retrocopy |
retro_cfam_1304 ,
|
Choloepus hoffmanni | ENSCHOG00000007288 | 1 retrocopy | |
Equus caballus | ENSECAG00000008311 | 1 retrocopy | |
Felis catus | ENSFCAG00000025893 | 1 retrocopy | |
Homo sapiens | ENSG00000101421 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007775 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008084 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000017821 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010020 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010931 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013408 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010293 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000046585 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013212 | 1 retrocopy |