RetrogeneDB ID: | retro_mputfur_697 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896936.1:6343430..6344099(-) | ||
Located in intron of: | ENSMPUG00000002533 | ||
Retrocopyinformation | Ensembl ID: | ENSMPUG00000019423 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHMP4B | ||
Ensembl ID: | ENSMPUG00000017821 | ||
Aliases: | None | ||
Description: | charged multivesicular body protein 4B [Source:HGNC Symbol;Acc:16171] |
Percent Identity: | 79.46 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSVFGKLFGAGGGKAGKGGPTPQDAIQRLRDTEEMLSKKQEFLETKIEQELTAAKKHGTKNKRAALQALK |
MS.FGKLFGAG.GK..KG..TP.DAIQ.L.D..EM.SKKQEFLE.K.EQELTA.KK..T......LQA.K | |
Retrocopy | MSRFGKLFGAGRGKTRKGTLTPPDAIQWLWDMMEMQSKKQEFLEMKLEQELTATKKPSTERSPWGLQAPK |
Parental | RKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQE |
..KRY.KQLAQIDGTLST.EFQREAL.NA.TNTE.LKNMG.AAKA.KAAHDN..IDKVDEL.QDIADQQE | |
Retrocopy | HRKRYRKQLAQIDGTLSTMEFQREALDNARTNTELLKNMGSAAKATKAAHDNTAIDKVDELKQDIADQQE |
Parental | LAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSITLPSKPTKKKEEE |
LA.E.STAISKPVG.GE.FDEDELMAELEELEQEELDKNLLE.SGP.TVPLPNVPSITLPSKP..KKEE. | |
Retrocopy | LARELSTAISKPVGYGEGFDEDELMAELEELEQEELDKNLLEVSGPATVPLPNVPSITLPSKPS-KKEEK |
Parental | EDDMKELENWAGSI |
EDDMKELENW.GSI | |
Retrocopy | EDDMKELENWVGSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009038 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000007478 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007288 | 1 retrocopy | |
Equus caballus | ENSECAG00000008311 | 1 retrocopy | |
Felis catus | ENSFCAG00000025893 | 1 retrocopy | |
Homo sapiens | ENSG00000101421 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007775 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008084 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000017821 | 2 retrocopies |
retro_mputfur_1302, retro_mputfur_697 ,
|
Nomascus leucogenys | ENSNLEG00000010020 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010931 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013408 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010293 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000046585 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013212 | 1 retrocopy |