RetrogeneDB ID: | retro_mputfur_1302 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897074.1:376716..377176(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHMP4B | ||
Ensembl ID: | ENSMPUG00000017821 | ||
Aliases: | None | ||
Description: | charged multivesicular body protein 4B [Source:HGNC Symbol;Acc:16171] |
Percent Identity: | 52.2 % |
Parental protein coverage: | 69.64 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | QELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKA |
.E..A.K.H.TKNK...L..LK.KKR..K.L.....T.....FQ.EALE.....T..LKNM.Y.AKAMKA | |
Retrocopy | EETIATKNHSTKNKYTTLWSLKPKKRHKKPLVPVKRTRRPSKFQ*EALEIISSDTNRLKNMDYSAKAMKA |
Parental | AHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPE- |
A......D...ELMQ.IAD..E.....S..ISKP...GEE.DEDEL.AEL..LEQEELDKN.L.ISG... | |
Retrocopy | AYNTTNMDNIGELMQGIADL*EI----SAVISKPGRSGEELDEDELLAEL-ALEQEELDKNVLRISGRN* |
Parental | -TVPLP-NVPSITLPSKPT |
...P.P.NVPSI..P...T | |
Retrocopy | *NSPFP>NVPSIIPPACTT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009038 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000007478 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007288 | 1 retrocopy | |
Equus caballus | ENSECAG00000008311 | 1 retrocopy | |
Felis catus | ENSFCAG00000025893 | 1 retrocopy | |
Homo sapiens | ENSG00000101421 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007775 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008084 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000017821 | 2 retrocopies |
retro_mputfur_1302 , retro_mputfur_697,
|
Nomascus leucogenys | ENSNLEG00000010020 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010931 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013408 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010293 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000046585 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013212 | 1 retrocopy |