RetrogeneDB ID: | retro_pabe_1111 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 14:55847659..55848199(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHMP4B | ||
Ensembl ID: | ENSPPYG00000010931 | ||
Aliases: | None | ||
Description: | charged multivesicular body protein 4B [Source:HGNC Symbol;Acc:16171] |
Percent Identity: | 77.42 % |
Parental protein coverage: | 87.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QRLRDTEEMLSKKQEFLE-KKIEQEALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNM |
..L....E.L.KK.E.....K....A.Q.LK.KKRYEKQLA.IDGTLSTIE....AL.NANTNTEVLKNM | |
Retrocopy | EMLTEKQEFLEKKIEQRHGTKNKCAAHQTLKHKKRYEKQLAHIDGTLSTIE--QQALKNANTNTEVLKNM |
Parental | GYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKN |
G.AA.A.KAAHDNMDIDKVDELMQDIADQQEL.EEISTAISKPVGFGE..DEDELMAELEELEQEELDKN | |
Retrocopy | GSAAQAKKAAHDNMDIDKVDELMQDIADQQELGEEISTAISKPVGFGEKSDEDELMAELEELEQEELDKN |
Parental | LLEISGPETVPLPNVPS-IALPSKPAKKK-EEEDDDMKELENWAGS |
LLEISGPETV.LPNVPS.IALPSKPAKK..E..D..MK.LENWAGS | |
Retrocopy | LLEISGPETVSLPNVPS>IALPSKPAKKR<EDDD--MKDLENWAGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 128 .11 RPM |
SRP007412_cerebellum | 0 .36 RPM | 58 .49 RPM |
SRP007412_heart | 0 .24 RPM | 39 .59 RPM |
SRP007412_kidney | 0 .73 RPM | 72 .39 RPM |
SRP007412_liver | 0 .52 RPM | 56 .86 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1339 |
Pan troglodytes | retro_ptro_915 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009038 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000007478 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007288 | 1 retrocopy | |
Equus caballus | ENSECAG00000008311 | 1 retrocopy | |
Felis catus | ENSFCAG00000025893 | 1 retrocopy | |
Homo sapiens | ENSG00000101421 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007775 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008084 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000017821 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010020 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005691 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010931 | 1 retrocopy |
retro_pabe_1111 ,
|
Pan troglodytes | ENSPTRG00000013408 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010293 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000046585 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013212 | 1 retrocopy |