RetrogeneDB ID: | retro_ptro_915 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 14:54272640..54273257(+) | ||
Located in intron of: | ENSPTRG00000006373 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHMP4B | ||
Ensembl ID: | ENSPTRG00000013408 | ||
Aliases: | None | ||
Description: | charged multivesicular body protein 4B [Source:HGNC Symbol;Acc:16171] |
Percent Identity: | 76.56 % |
Parental protein coverage: | 93.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AGKGGPPQEAIQLRDTEEMLSKKQEFLEKKIE-QELTAAKKHGTKHKRAALQALKRKKRYEKQLAQIDGT |
AG.G........L......L....E.L.KK.E..E......HGTK.K.AALQALKRKKRYEKQLAQIDGT | |
Retrocopy | AGGGKASKGGPTLQEAIQRLRDTEEMLSKKQEFLEKKIEQRHGTKNKGAALQALKRKKRYEKQLAQIDGT |
Parental | LSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGF |
LSTIEFQ..ALENANTNTEVLKNMG.AAKA.KAAHDNMDIDKVDELMQDIADQQEL.EEISTAISKPVGF | |
Retrocopy | LSTIEFQQQALENANTNTEVLKNMGSAAKAKKAAHDNMDIDKVDELMQDIADQQELEEEISTAISKPVGF |
Parental | GEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIALPSKPAKKK-EEEDDDMKELENWAGS |
GE..DEDELMAELEELEQE..DKNLLEISGPETV.LPNVPSIALPSKPAKK..E..D..MK.LENWAGS | |
Retrocopy | GEKSDEDELMAELEELEQEQPDKNLLEISGPETVLLPNVPSIALPSKPAKKR<EDDD--MKDLENWAGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .82 RPM | 166 .68 RPM |
SRP007412_cerebellum | 1 .25 RPM | 118 .12 RPM |
SRP007412_heart | 0 .79 RPM | 81 .35 RPM |
SRP007412_kidney | 2 .48 RPM | 116 .19 RPM |
SRP007412_liver | 2 .55 RPM | 146 .13 RPM |
SRP007412_testis | 1 .58 RPM | 67 .87 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1339 |
Pongo abelii | retro_pabe_1111 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009038 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000007478 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007288 | 1 retrocopy | |
Equus caballus | ENSECAG00000008311 | 1 retrocopy | |
Felis catus | ENSFCAG00000025893 | 1 retrocopy | |
Homo sapiens | ENSG00000101421 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007775 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008084 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000017821 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010020 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010931 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013408 | 1 retrocopy |
retro_ptro_915 ,
|
Pteropus vampyrus | ENSPVAG00000010293 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000046585 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013212 | 1 retrocopy |