RetrogeneDB ID: | retro_cfam_1533 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 33:22000424..22001177(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DCAF13 | ||
Ensembl ID: | ENSCAFG00000000663 | ||
Aliases: | DCAF13, WDSOF1 | ||
Description: | DDB1 and CUL4 associated factor 13 [Source:HGNC Symbol;Acc:24535] |
Percent Identity: | 74.71 % |
Parental protein coverage: | 56.85 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | CLAKHPKSLATVLSGACDGEVRIWNLTK-RKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWK-M |
CLAKHPKS.A..L.G....EVRIWNLTK..KCI.T....E.FV..ICT.FCGTSF.TVGD.KT.KQWK.M | |
Retrocopy | CLAKHPKSGAAALCGVSNEEVRIWNLTK<MKCICT--RYEDFVQIICTPFCGTSFSTVGDAKTGKQWK>M |
Parental | DGPGYGEEEEPLHTILGKTVYTG-IDHHWKEAVFATCGQQVDIWDEQRTSPICSMTWGFDSISSVKFNPI |
DGPGYGEEEE.LHTILGKT.....IDHHW.E..FA.CGQQVDIWDEQRTSPI.SMTW.F.SI..VKFN.I | |
Retrocopy | DGPGYGEEEETLHTILGKTMFAR>IDHHWRETIFASCGQQVDIWDEQRTSPIYSMTWRFNSINNVKFNTI |
Parental | ETF-LLGSCASDRNIVLYDMRQATPLKKVILDMRTNTICWNPMEAFIFTAANEDYNLYTFDMRALDTPVM |
ETF..L.SCASDRNIVL.DM....P.KKVILDMRTN.I.WNP..AFIFTAANED.N...FDMR.LD.P.M | |
Retrocopy | ETF<FLESCASDRNIVLDDMKHTSPIKKVILDMRTNAIYWNPVKAFIFTAANED*NVRSFDMRVLDIPLM |
Parental | VHMDHVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVYHTK |
VHMDH.S.VLDVDY.PTGKEFVSASFDKSI.IF.VDKSRSREVYHT. | |
Retrocopy | VHMDHASVVLDVDYFPTGKEFVSASFDKSI*IFSVDKSRSREVYHTE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 13 .15 RPM |
SRP017611_brain | 0 .00 RPM | 9 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .90 RPM |
SRP017611_liver | 0 .00 RPM | 6 .24 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001595 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000000663 | 3 retrocopies |
retro_cfam_1309, retro_cfam_1533 , retro_cfam_305,
|
Callithrix jacchus | ENSCJAG00000016181 | 2 retrocopies | |
Felis catus | ENSFCAG00000027256 | 1 retrocopy | |
Homo sapiens | ENSG00000164934 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015124 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007375 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003791 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002277 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018809 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000020493 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006588 | 1 retrocopy |