RetrogeneDB ID: | retro_pabe_1249 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 15:47568294..47569629(+) | ||
Located in intron of: | ENSPPYG00000006473 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DCAF13 | ||
Ensembl ID: | ENSPPYG00000018809 | ||
Aliases: | DCAF13, WDSOF1 | ||
Description: | DDB1- and CUL4-associated factor 13 [Source:RefSeq peptide;Acc:NP_001126898] |
Percent Identity: | 88.37 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 2 |
Parental | MKVKMLSRNPDNYVRETKLDLQRVPRNYDPTLHPFEVPREYVRALNATKLERVFAKPFLASLDGHRDGVN |
M..K.LS.N.DNYV.ETKLDLQRVPRN.DPTLHPFEVP.EYVRALNATK.E.VFAKPFLA.LDGH.DGV. | |
Retrocopy | MRMKILSQNLDNYVCETKLDLQRVPRNCDPTLHPFEVP*EYVRALNATKME*VFAKPFLALLDGHQDGVS |
Parental | CLAKHPKNLATVLSG-ACDGEVRIWNLTQRNCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMD |
CLAKHP.NL.TVLSG.AC.GEVRIWNLTQ..CIRTIQAHEGFV.GICT.FCGTSFFTVG.DKTVKQWKMD | |
Retrocopy | CLAKHPRNLGTVLSG<ACGGEVRIWNLTQQKCIRTIQAHEGFV*GICTHFCGTSFFTVGGDKTVKQWKMD |
Parental | GPGYGDEEEPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDEQRTNPVCSMTWGFDSISSVKFNPIET |
GPGYGDEEEPLHT.LGKTVYTG..HHWKEA.FATCGQQVD.WDEQRTNP.CSMTWGFDS.SSVKFNPIET | |
Retrocopy | GPGYGDEEEPLHTTLGKTVYTGVYHHWKEAAFATCGQQVDVWDEQRTNPICSMTWGFDSVSSVKFNPIET |
Parental | FLLGS-CASDRNIVLYDMRQATPLKKVILDMRTNTICWNPMEAFIFTAANEDYNLYTFDMRALDTPVMVH |
FLLGS.CASDRNIVLY.MRQATPLKKVILDMRTNT.CWNPMEAFIFTAANEDYNL.TFDM.ALDTPVM.H | |
Retrocopy | FLLGS>CASDRNIVLYNMRQATPLKKVILDMRTNTVCWNPMEAFIFTAANEDYNLHTFDMCALDTPVMFH |
Parental | MDHVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVYHTKRMQHVICVKWTSDSKYIMCGSDEMN |
MDHVSAVLD.DY.PTGKEFVSASFDK.I.IFP.DKS.SREVYHTK..QHVICVKWTSDSKYIMCGSDEMN | |
Retrocopy | MDHVSAVLDMDYPPTGKEFVSASFDKAI*IFPIDKS*SREVYHTK*IQHVICVKWTSDSKYIMCGSDEMN |
Parental | IRLWKANASEKLGVLTSREKAAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKE |
I.LWKANASEK.GVLTSREKAAKDYN.KLKEKFQH.PHIK.IA.HRHLPKSIYSQIQEQRIMKEARRRKE | |
Retrocopy | ICLWKANASEKFGVLTSREKAAKDYN*KLKEKFQHHPHIKYIACHRHLPKSIYSQIQEQRIMKEARRRKE |
Parental | VNRIKHSKPGSVPIVSEKKKHVVAVVK |
VN.IKHSKPGSVP.VSEKKKHV.AVVK | |
Retrocopy | VNCIKHSKPGSVPVVSEKKKHVGAVVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 11 .06 RPM |
SRP007412_cerebellum | 0 .24 RPM | 21 .52 RPM |
SRP007412_heart | 0 .09 RPM | 11 .41 RPM |
SRP007412_kidney | 0 .23 RPM | 33 .41 RPM |
SRP007412_liver | 0 .21 RPM | 16 .19 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1498 |
Pan troglodytes | retro_ptro_1017 |
Gorilla gorilla | retro_ggor_1150 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001595 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000000663 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000016181 | 2 retrocopies | |
Felis catus | ENSFCAG00000027256 | 1 retrocopy | |
Homo sapiens | ENSG00000164934 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015124 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007375 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003791 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002277 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018809 | 2 retrocopies |
retro_pabe_1249 , retro_pabe_3211,
|
Pan troglodytes | ENSPTRG00000020493 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006588 | 1 retrocopy |