Parental gene:

DCAF13, ENSPTRG00000020493

Aliases:DCAF13, WDSOF1
Description:DDB1 and CUL4 associated factor 13 [Source:HGNC Symbol;Acc:24535]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:8:101748987..101777491(+)


>ENSPTRG00000020493
ATGCAGTGGCCGCCTCCTTGGCGACGGTCGCCCCTTGTGAGCGCAACCCCGACTCTCGGACCTACTACAGGATTCTTACG
CTCAAGGTGGCTGAGCGAAGCCGGAGACTCTCGTACTGAGGGNNNNNNNNNNCCGAGTCTCCGCCCTGCCTCGCCCAATG
CTCCAGCCCACGGACGCGGAAGCGACTGCACCGCTAAAGAACCGCCCCTTGCTAACGTTTGCCGGCAAAACTACGGAGCG
GCGCAGGATCCAGTTGAGCCAGCAGGCCGCCGCTCCGCGAGTCACGTGACTGGAAGTAGTCTGGGAAAAGCGGAAGTCGC
CTGTGGGAGGAGGTGGCGGTGGGCGGAACTCGTAGCGAACAGCTCGTGGAGTCCGGCCGGAAGAGCAACCGAGATGAAGG
TGAAGATGCTGAGCCGGAATCCGGACAATTATGTCCGCGAAACCAAGTTGGACTTACAGAGAGTTCCAAGAAACTATGAT
CCTGCTTTACATCCTTTTGAGGTCCCACGAGAATATGTAAGAGCTTTAAATGCTACCAAACTGGAACGAGTATTTGCAAA
ACCATTCCTTGCTTCGCTGGATGGTCACCGTGATGGAGTCAATTGCTTGGCAAAGCATCCAGAGAACCTGGCTACTGTCC
TTTCTGGGGCGTGTGATGGAGAGGTTAGAATTTGGAATCTAACTCAGCGGAATTGTATCCGTACAATACAAGCACATGAA
GGCTTTGTACGAGGAATATGTACTCGCTTTTGTGGGACTTCTTTTTTCACTGTTGGTGATGACAAAACTGTGAAGCAGTG
GAAAATGGATGGGCCAGGCTATGGAGACGAGGAAGAGCCATTACATACAATATTAGGAAAGACAGTGTATACTGGGATTG
ATCATCACTGGAAAGAAGCTGTTTTTGCCACATGTGGACAGCAAGTAGACATTTGGGATGAACAAAGAACTAATCCTATA
TGTTCAATGACCTGGGGATTTGACAGTATAAGTAGTGTTAAATTTAACCCAATTGAGACATTTCTCTTGGGAAGTTGTGC
ATCTGACAGGAATATAGTACTGTACGATATGAGGCAAGCTACTCCTTTGAAAAAGGTTATCTTAGATATGAGAACAAATA
CAATCTGTTGGAACCCTATGGAAGCTTTCATTTTTACAGCAGCAAATGAAGATTATAACTTATATACTTTTGATATGCGT
GCACTGGACACTCCTGTAATGGTCCATATGGATCATGTATCTGCAGTGCTTGATGTGGATTACTCTCCCACTGGGAAGGA
GTTTGTGTCTGCTAGTTTCGATAAATCTATTCGAATCTTTCCTGTAGACAAAAGTCGAAGCAGGGAGGTATATCATACAA
AGAGAATGCAACATGTTATCTGTGTAAAATGGACTTCTGACAGCAAGTATATTATGTGTGGATCTGATGAAATGAACATT
CGCCTGTGGAAAGCTAATGCTTCTGAAAAATTGGGTGTGCTTACATCACGAGAAAAAGCAGCCAAGGATTATAACCAGAA
ATTGAAGGAGAAATTTCAGCATTATCCTCATATAAAACGTATAGCTCGTCATCGACATCTACCAAAATCTATCTATAGCC
AGATTCAGGAACAGCGCATCATGAAAGAAGCTCGTCGACGAAAGGAAGTGAATCGTATTAAACACAGCAAGCCTGGATCT
GTGCCAATTGTGTCAGAGAAGAAGAAACACGTAGTGGCAGTTGTAAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 13 .12 RPM
SRP007412_cerebellum 15 .59 RPM
SRP007412_heart 13 .23 RPM
SRP007412_kidney 31 .96 RPM
SRP007412_liver 13 .49 RPM
SRP007412_testis 98 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001595 ortholog_one2one 3 retrogenes
retro_amel_1453, retro_amel_1723, retro_amel_399,
Canis familiaris ENSCAFG00000000663 ortholog_one2one 3 retrogenes
retro_cfam_1309, retro_cfam_1533, retro_cfam_305,
Callithrix jacchus ENSCJAG00000016181 ortholog_one2one 2 retrogenes
retro_cjac_3083, retro_cjac_612,
Felis catus ENSFCAG00000027256 ortholog_one2one 1 retrogene
retro_fcat_1840,
Homo sapiens ENSG00000164934 ortholog_one2one 1 retrogene
retro_hsap_1498,
Gorilla gorilla ENSGGOG00000015124 ortholog_one2one 1 retrogene
retro_ggor_1150,
Myotis lucifugus ENSMLUG00000007375 ortholog_one2one 1 retrogene
retro_mluc_2048,
Nomascus leucogenys ENSNLEG00000003791 ortholog_one2one 1 retrogene
retro_nleu_1718,
Otolemur garnettii ENSOGAG00000002277 ortholog_one2one 1 retrogene
retro_ogar_305,
Pongo abelii ENSPPYG00000018809 ortholog_one2one 2 retrogenes
retro_pabe_1249, retro_pabe_3211,
Sarcophilus harrisii ENSSHAG00000006588 ortholog_one2one 1 retrogene
retro_shar_507,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1017 86.88 80.56
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Download FASTA sequences of all ENSPTRG00000020493 retrocopies