RetrogeneDB ID: | retro_shar_507 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL849718.1:60478..61306(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DCAF13 | ||
Ensembl ID: | ENSSHAG00000006588 | ||
Aliases: | None | ||
Description: | DDB1 and CUL4 associated factor 13 [Source:HGNC Symbol;Acc:24535] |
Percent Identity: | 81.72 % |
Parental protein coverage: | 62.02 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 3 |
Parental | IFATCGQQVDIWDEQRTSPICSMTWGLDSISSVKFNPIEINILG-SCASDRNIVLYDMRQATPLKKVILD |
IFA.CGQQV.IWDE..T..ICSM.WGLDSISSVK..P.....LG.SCASDRNIVLYDMRQATPLKKVILD | |
Retrocopy | IFASCGQQVYIWDE*KTNTICSMSWGLDSISSVK-QPH*YHYLG>SCASDRNIVLYDMRQATPLKKVILD |
Parental | MRTNTICWNPMEAFVFTAANEDYNLYTFDMRSLDEPVKVHVNHVSAVLDVDYSPTGKEFVSASFDKSIRI |
MRTNTICWNPME.FVF.AANEDYNLYTFDM.SLDEPVKVHVN.VSAVL.V.YS.TGKEFVSA.FDKSI.I | |
Retrocopy | MRTNTICWNPMEVFVFIAANEDYNLYTFDMCSLDEPVKVHVNYVSAVLGVNYSATGKEFVSATFDKSI*I |
Parental | FPVDKMHS-REVYHTKRMQHVISVKWTSDNKYILCGSDEMNIRLWKANASEKLG-VLTSREKAALNYNQK |
FP.DK....RE.YHTKRMQH...VKW.SD.KYIL.GSDEMNI.LWKANAS.K...VLTS..KAALNYNQK | |
Retrocopy | FPIDKIIT>REAYHTKRMQHAVFVKWISDKKYILSGSDEMNI*LWKANASKKID>VLTS*KKAALNYNQK |
Parental | LKEKFKYHPQISRIARHRHLPKTIYSQIKEQRIMKEARQRKQMNRIKHSKPGSIPFVSEKKKHIVAVVK |
.KEKFKYHPQISRIARH.HL.KTIYSQIKEQRIMKE..QRK.MN..KHSKPGSIPFVSEKKKHIVAVVK | |
Retrocopy | *KEKFKYHPQISRIARHCHLSKTIYSQIKEQRIMKESHQRK*MNHKKHSKPGSIPFVSEKKKHIVAVVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001595 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000000663 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000016181 | 2 retrocopies | |
Felis catus | ENSFCAG00000027256 | 1 retrocopy | |
Homo sapiens | ENSG00000164934 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015124 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007375 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003791 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002277 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018809 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000020493 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006588 | 1 retrocopy |
retro_shar_507 ,
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