RetrogeneDB ID: | retro_hsap_1498 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 15:51236800..51238193(+) | ||
Located in intron of: | ENSG00000081014 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000259378 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DCAF13 | ||
Ensembl ID: | ENSG00000164934 | ||
Aliases: | DCAF13, GM83, WDSOF1 | ||
Description: | DDB1 and CUL4 associated factor 13 [Source:HGNC Symbol;Acc:24535] |
Percent Identity: | 86.67 % |
Parental protein coverage: | 77.72 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 1 |
Parental | RWAELLADTSWSPAGRATEMKVKMLSRNPDNYVRETKLDLQRVPRNYDPALHPFEVPREYIRALNATKLE |
.W.EL.A..SWSPA.RAT.M..K.LS.N.DNYV.ETKLDLQRVPRNYDP.LHPFEVP.EY.RALNATK.E | |
Retrocopy | QWTELTAKSSWSPARRATKMRMKILSQNLDNYVCETKLDLQRVPRNYDPTLHPFEVP*EYVRALNATKME |
Parental | RVFAKPFLASLDGHRDGVNCLAKHPEKLATVLSGACDGEVRIWNLTQRNCIRTIQAHEGFVRGICTRFCG |
.VFAKPFLA.LDGH.DGV.CLAKHP..LATVLSGACDGEVRIWNLTQ..CI.TIQAHEGFV.GI.T.FCG | |
Retrocopy | *VFAKPFLALLDGHQDGVSCLAKHPKNLATVLSGACDGEVRIWNLTQQKCIHTIQAHEGFV*GIRTHFCG |
Parental | TSFFTVGDDKTVKQWKMDGPGYGDEEEPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDEQRTNPICS |
TSFFTVG.DKTVKQWKMDGPGYGDEEEPLHT.LGKTVYTG..HH.KEAVFATCGQQVDIWDEQRTNP.CS | |
Retrocopy | TSFFTVGGDKTVKQWKMDGPGYGDEEEPLHTTLGKTVYTGVYHHCKEAVFATCGQQVDIWDEQRTNPVCS |
Parental | MTWGFDSISSVKFNPIETFLLGS-CASDRNIVLYDMRQATPLKKVILDMRTNTICWNPMEAFIFTAANED |
MTWGFDS.SSVKFNPIETFLLGS.CASDRNIVLY.MRQATPLKKVILDMRTNT.CWNPMEAFIFTAANED | |
Retrocopy | MTWGFDSVSSVKFNPIETFLLGS>CASDRNIVLYNMRQATPLKKVILDMRTNTVCWNPMEAFIFTAANED |
Parental | YNLYTFDMRALDTPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVYHTKRMQHVIC |
YNL.TFDM.ALDTPVM.HMDHVSAVLD.DY.PTGKE.VSASFDK.I.IFP.DKS.SREVYHTKRMQHVIC | |
Retrocopy | YNLHTFDMCALDTPVMFHMDHVSAVLDMDYPPTGKELVSASFDKAICIFPIDKS*SREVYHTKRMQHVIC |
Parental | VKWTSDSKYIMCGSDEMNIRLWKANASEKLGVLTSREKAAKDYNQKLKEKFQHYPHIKRIARHRHLPKSI |
VK.TSDSKYIMCGSDEMNI.LWKANASEK.GVLTS.EKAAKDYN.KLKEKFQH.P.IK.IA.H.HLPKSI | |
Retrocopy | VKCTSDSKYIMCGSDEMNICLWKANASEKFGVLTS*EKAAKDYN*KLKEKFQHHPDIKCIACH*HLPKSI |
Parental | YSQIQEQRIMKEARRRKEVNRIKHSKPGSVPLVSEKKKHVVAVVK |
YSQIQEQ.IMKEARRRKEVNRIKHSKPGSVP.VSEKKKHV.AVVK | |
Retrocopy | YSQIQEQCIMKEARRRKEVNRIKHSKPGSVPIVSEKKKHVGAVVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 21 .91 RPM |
bodymap2_adrenal | 0 .12 RPM | 41 .72 RPM |
bodymap2_brain | 0 .14 RPM | 15 .73 RPM |
bodymap2_breast | 0 .00 RPM | 26 .91 RPM |
bodymap2_colon | 0 .08 RPM | 30 .90 RPM |
bodymap2_heart | 0 .07 RPM | 14 .46 RPM |
bodymap2_kidney | 0 .04 RPM | 45 .43 RPM |
bodymap2_liver | 0 .09 RPM | 20 .09 RPM |
bodymap2_lung | 0 .18 RPM | 14 .59 RPM |
bodymap2_lymph_node | 0 .13 RPM | 24 .67 RPM |
bodymap2_ovary | 0 .10 RPM | 46 .57 RPM |
bodymap2_prostate | 0 .00 RPM | 26 .78 RPM |
bodymap2_skeletal_muscle | 0 .13 RPM | 19 .57 RPM |
bodymap2_testis | 0 .17 RPM | 82 .26 RPM |
bodymap2_thyroid | 0 .08 RPM | 36 .83 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 28 .80 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1017 |
Gorilla gorilla | retro_ggor_1150 |
Pongo abelii | retro_pabe_1249 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001595 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000000663 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000016181 | 2 retrocopies | |
Felis catus | ENSFCAG00000027256 | 1 retrocopy | |
Homo sapiens | ENSG00000164934 | 1 retrocopy |
retro_hsap_1498 ,
|
Gorilla gorilla | ENSGGOG00000015124 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007375 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003791 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002277 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018809 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000020493 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006588 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .04 RPM |
CEU_NA11843 | 0 .09 RPM |
CEU_NA11930 | 0 .10 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .07 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .14 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .10 RPM |
FIN_HG00183 | 0 .16 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .12 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .06 RPM |
FIN_HG00349 | 0 .06 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .05 RPM |
FIN_HG00378 | 0 .06 RPM |
GBR_HG00099 | 0 .06 RPM |
GBR_HG00111 | 0 .04 RPM |
GBR_HG00114 | 0 .08 RPM |
GBR_HG00119 | 0 .10 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .09 RPM |
GBR_HG00137 | 0 .05 RPM |
GBR_HG00142 | 0 .08 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .06 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .11 RPM |
TSI_NA20532 | 0 .14 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .10 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .06 RPM |
YRI_NA19093 | 0 .05 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .08 RPM |
YRI_NA19118 | 0 .04 RPM |
YRI_NA19213 | 0 .12 RPM |
YRI_NA19214 | 0 .10 RPM |
YRI_NA19223 | 0 .12 RPM |