RetrogeneDB ID: | retro_cfam_305 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:38079043..38080372(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000029107 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DCAF13 | ||
Ensembl ID: | ENSCAFG00000000663 | ||
Aliases: | DCAF13, WDSOF1 | ||
Description: | DDB1 and CUL4 associated factor 13 [Source:HGNC Symbol;Acc:24535] |
Percent Identity: | 96.85 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MKVKMLSRNPDNYVRETKLDLQRVPRNYDPTLHPFEVPREYVRALNATKLERVFAKPFLASLDGHRDGVN |
MKVKMLSRNPDN....TKLDLQRVPRNYDPTLHPFEVP.EYVRALNATKLERVFAKPFLASLDGHRDGVN | |
Retrocopy | MKVKMLSRNPDN*SAKTKLDLQRVPRNYDPTLHPFEVPIEYVRALNATKLERVFAKPFLASLDGHRDGVN |
Parental | CLAKHPKSLATVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMDG |
CLAKHPKSLA.VLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMDG | |
Retrocopy | CLAKHPKSLAAVLSGACDGEVRIWNLTKRKCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMDG |
Parental | PGYGEEEEPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDEQRTSPICSMTWGFDSISSVKFNPIETF |
PGYGEEEEPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDEQRTSPICSMTWGFDSISSVKFNPIETF | |
Retrocopy | PGYGEEEEPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDEQRTSPICSMTWGFDSISSVKFNPIETF |
Parental | LLGSCASDRNIVLYDMRQATPLKKVILDMRTNTICWNPMEAFIFTAANEDYNLYTFDMRALDTPVMVHMD |
LLGSCASDRN.VLYDMRQATPLKKVILDMRTNTICWNPMEAFIFTAANEDYNLYTFDMRALDTPVMVHMD | |
Retrocopy | LLGSCASDRNTVLYDMRQATPLKKVILDMRTNTICWNPMEAFIFTAANEDYNLYTFDMRALDTPVMVHMD |
Parental | HVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVYHTKRMQHVICVKWTSDSKYIMCGSDEMNIR |
HVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVYHTKRMQ.VICVKWTSDSKYIMCGSDEMNI. | |
Retrocopy | HVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVYHTKRMQRVICVKWTSDSKYIMCGSDEMNIH |
Parental | LWKANASEKLGVLTSREKAAKDYNQKLKEKFQHHPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVN |
LWKANASEKLGVLTSREKAAKDYNQKLKEKFQHHPHIKRIA..RHLPKSIYSQIQ.QRIMKEA.RRKEVN | |
Retrocopy | LWKANASEKLGVLTSREKAAKDYNQKLKEKFQHHPHIKRIA--RHLPKSIYSQIQGQRIMKEAPRRKEVN |
Parental | RLKHSKPGSVSIVPEKKKHIVAVVK |
RLKHSKPGSV.IVPEKKKHIVAVVK | |
Retrocopy | RLKHSKPGSVLIVPEKKKHIVAVVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 13 .15 RPM |
SRP017611_brain | 0 .24 RPM | 9 .13 RPM |
SRP017611_kidney | 0 .07 RPM | 24 .90 RPM |
SRP017611_liver | 0 .00 RPM | 6 .24 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001595 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000000663 | 3 retrocopies |
retro_cfam_1309, retro_cfam_1533, retro_cfam_305 ,
|
Callithrix jacchus | ENSCJAG00000016181 | 2 retrocopies | |
Felis catus | ENSFCAG00000027256 | 1 retrocopy | |
Homo sapiens | ENSG00000164934 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015124 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007375 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003791 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002277 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018809 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000020493 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006588 | 1 retrocopy |