RetrogeneDB ID: | retro_cfam_160 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 16:53557778..53558345(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000008479 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000030220 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.96 % |
Parental protein coverage: | 96.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SHPHGVKRSASPDDDLGSSNWEAADLGNEERKQKFLRLMGAGKKEHTGRLVIGDHKSTSHFRTGEEDKKI |
SHPHGVKRSASPDDDLGSSNWEAADLGNEERKQKFLR.MGAGKKEHTG.LVI.DHKSTSHFRTGEEDKKI | |
Retrocopy | SHPHGVKRSASPDDDLGSSNWEAADLGNEERKQKFLRFMGAGKKEHTGSLVIRDHKSTSHFRTGEEDKKI |
Parental | NEELESQYQQSMDSKLSGRYRRHCGLGFSEVEDHDGEGDVAGDDDDDDDSPD---PESPD-DSESDSESE |
NEELESQYQQSMDSKLS.RYRRHCGLGF.EVEDHDGEGDVAGDDDDDDD..D.....SPD..S..DSES. | |
Retrocopy | NEELESQYQQSMDSKLSRRYRRHCGLGFGEVEDHDGEGDVAGDDDDDDDDDDDDDDDSPDPESPDDSESD |
Parental | KE----ESAEELQATEHPDEVEDPKNKKDAKSNYKMMFVKSSGS |
.E....ESAE.LQATEHPDEVEDPK.KKDAKSNYKMMFVKSSGS | |
Retrocopy | SESEKEESAEGLQATEHPDEVEDPKDKKDAKSNYKMMFVKSSGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 76 .94 RPM |
SRP017611_brain | 0 .24 RPM | 38 .51 RPM |
SRP017611_kidney | 0 .40 RPM | 93 .64 RPM |
SRP017611_liver | 0 .00 RPM | 24 .51 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000030220 | 2 retrocopies |
retro_cfam_160 , retro_cfam_717,
|
Callithrix jacchus | ENSCJAG00000009626 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000009679 | 2 retrocopies | |
Equus caballus | ENSECAG00000011778 | 1 retrocopy | |
Felis catus | ENSFCAG00000027747 | 1 retrocopy | |
Homo sapiens | ENSG00000110696 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000011795 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001589 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007147 | 2 retrocopies | |
Mus musculus | ENSMUSG00000030663 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017719 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000025335 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000000154 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003458 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000020436 | 1 retrocopy |