RetrogeneDB ID: | retro_cpor_1331 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_7:16445592..16445934(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C11ORF58 | ||
Ensembl ID: | ENSCPOG00000009679 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.91 % |
Parental protein coverage: | 62.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSAARESHPHGVKRSASPDDDLGSSNWEAADLGSEERK-QKFLRLMGAGKKEHTGRLVIGDHKSTSHFRT |
MS..RESHP..VK.SAS.....GSSNWEAA...SE....Q..LR..GAGKK.H.G.LVIGDHKSTSHF.. | |
Retrocopy | MSKVRESHPCRVKHSASCGEEPGSSNWEAANICSEXXXXQRSLRFKGAGKKGHSGCLVIGDHKSTSHFIV |
Parental | GEEDKKINEELESQYQQSMDSKLSGRYRRHCGLGFSEVEDHDGE |
.E..K...E.LESQYQQ.MDSKL.GRYR.H.GL.FSE.E.HDGE | |
Retrocopy | DEKQKENIEPLESQYQQRMDSKLTGRYRPHSGLDFSESEGHDGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 28 .30 RPM |
SRP017611_kidney | 0 .00 RPM | 34 .55 RPM |
SRP017611_liver | 0 .00 RPM | 30 .21 RPM |
SRP040447_lung | 0 .00 RPM | 34 .93 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 30 .76 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000030220 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000009626 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000009679 | 2 retrocopies |
retro_cpor_1331 , retro_cpor_772,
|
Equus caballus | ENSECAG00000011778 | 1 retrocopy | |
Felis catus | ENSFCAG00000027747 | 1 retrocopy | |
Homo sapiens | ENSG00000110696 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000011795 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001589 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007147 | 2 retrocopies | |
Mus musculus | ENSMUSG00000030663 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017719 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000025335 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000000154 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003458 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000020436 | 1 retrocopy |