RetrogeneDB ID:

retro_ogar_2569

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873634.1:6913840..6914216(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:C11orf58
Ensembl ID:ENSOGAG00000025335
Aliases:None
Description:chromosome 11 open reading frame 58 [Source:HGNC Symbol;Acc:16990]


Retrocopy-Parental alignment summary:






>retro_ogar_2569
AGCCGGCAGAGCATCACCATGGGGACCAAGCGGTCAGCCTCCCCGACAACAAGCTTGGATTTAGCAATTGGGAAGCAGCT
GACTTGGATACTGAAGAGAGAAAACAAAAATTCTTGAGGCTGATGGGTTCAGGGAAAAAGGACATACTGATGGTCTGATT
ATAGGAGATTGCCAATCAACATCTCACTTCGGAACAGGGGAAGAAGACAGGAAGATTTATGAAGAATTGAAGTCTCGATA
TCAGCAGCGCATGGACAGTAAATTATCAGGAAGATAGCTGGAGACAGTGTGGACTCGGCTCGGGTCAGGAAGGAGACCAC
GATGCAGAAAGCAATGTAGCTGGAGATGATGACACGATGATGATTCGCCTGCTCCC

ORF - retro_ogar_2569 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.94 %
Parental protein coverage: 69.4 %
Number of stop codons detected: 0
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalARESHPHGVKRSASP-DDDLGSSNWEAADLGNEERKQKFLRLMGAGKKE-HTGRLVIGDHKSTSHFRTGE
.R.S...G.KRSASP.D..LG.SNWEAADL..EERKQKFLRLMG.GKK..HT..L.IGD..STSHF.TGE
RetrocopySRQSITMGTKRSASP<DNKLGFSNWEAADLDTEERKQKFLRLMGSGKKD<HTDGLIIGDCQSTSHFGTGE
ParentalEDKKINEELESQYQQSMDSKLSGR-YRRHCGLGFSEVEDHDGEGDVAGDDD-DDDDDSPDP
ED.KI.EEL.S.YQQ.MDSKLSGR...R.CGLG.....DHD.E..VAGDDD..DD.DSP.P
RetrocopyEDRKIYEELKSRYQQRMDSKLSGR>SWRQCGLGSGQEGDHDAESNVAGDDD<HDD-DSPAP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2569 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 22 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000302202 retrocopies
Callithrix jacchus ENSCJAG000000096261 retrocopy
Cavia porcellus ENSCPOG000000096792 retrocopies
Equus caballus ENSECAG000000117781 retrocopy
Felis catus ENSFCAG000000277471 retrocopy
Homo sapiens ENSG000001106962 retrocopies
Macropus eugenii ENSMEUG000000117951 retrocopy
Myotis lucifugus ENSMLUG000000015891 retrocopy
Monodelphis domestica ENSMODG000000071472 retrocopies
Mus musculus ENSMUSG000000306632 retrocopies
Nomascus leucogenys ENSNLEG000000177191 retrocopy
Otolemur garnettii ENSOGAG00000025335 2 retrocopies
retro_ogar_1613, retro_ogar_2569 ,
Ochotona princeps ENSOPRG000000001541 retrocopy
Pongo abelii ENSPPYG000000034582 retrocopies
Rattus norvegicus ENSRNOG000000204361 retrocopy



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