RetrogeneDB ID: | retro_mmus_2616 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:143456901..143457440(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | 1110004F10Rik | ||
Ensembl ID: | ENSMUSG00000030663 | ||
Aliases: | 1110004F10Rik, Smacp, Smap, sid2057, sid2057p | ||
Description: | RIKEN cDNA 1110004F10 gene [Source:MGI Symbol;Acc:MGI:1929274] |
Percent Identity: | 82.07 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MSAARESHPHGVKRSASPDDDLGSSNWEAADLGNEERKQKFLRLMGAGKKEHTGRLVIGDHKSTSHFRTG |
MSAA.ESHPHGVKRSAS.DD.LGSSNWEA.DLGNEERKQKFLRLM.AGKKEHTG.LVIGDHKSTSHF.T. | |
Retrocopy | MSAAWESHPHGVKRSASSDDNLGSSNWEAEDLGNEERKQKFLRLMSAGKKEHTGCLVIGDHKSTSHFLTE |
Parental | EEDKK-INEELE-SQYQQSMDSKLSGRYRRHCGLGFSEVEDHDGEGDVAGDDDEDDSPDAESPDDSDS-D |
E..KK.INE.L..SQYQQSMDSKLSG.YR.HCGL.FSEVEDHDGEGDVAGDDDEDDSPDAESPDDS.S.. | |
Retrocopy | EDNKK>INEALD<SQYQQSMDSKLSGHYRQHCGLSFSEVEDHDGEGDVAGDDDEDDSPDAESPDDSVS<S |
Parental | SESEKEESAEELHAAEHPDDTEDPKSKKDAKSNYKMMFVKSSGS |
.....E...EELHAAEH..DTEDPKSKKD.K.NYKM.FVKSSGS | |
Retrocopy | ESEKEESA-EELHAAEHREDTEDPKSKKDVKNNYKMIFVKSSGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 49 .51 RPM |
SRP007412_cerebellum | 0 .00 RPM | 52 .11 RPM |
SRP007412_heart | 0 .00 RPM | 33 .03 RPM |
SRP007412_kidney | 0 .06 RPM | 39 .06 RPM |
SRP007412_liver | 0 .00 RPM | 27 .50 RPM |
SRP007412_testis | 0 .09 RPM | 45 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000030220 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000009626 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000009679 | 2 retrocopies | |
Equus caballus | ENSECAG00000011778 | 1 retrocopy | |
Felis catus | ENSFCAG00000027747 | 1 retrocopy | |
Homo sapiens | ENSG00000110696 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000011795 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001589 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007147 | 2 retrocopies | |
Mus musculus | ENSMUSG00000030663 | 2 retrocopies |
retro_mmus_2190, retro_mmus_2616 ,
|
Nomascus leucogenys | ENSNLEG00000017719 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000025335 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000000154 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003458 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000020436 | 1 retrocopy |