Parental gene:

C11orf58, ENSPPYG00000003458

Aliases:None
Description:small acidic protein [Source:RefSeq peptide;Acc:NP_001125161]
Organism:Orangutan (Pongo abelii)
Coordinates:11:53329824..53346426(-)


>ENSPPYG00000003458
ATGAGTGCTGCCAGAGAGTCTCACCCGCATGGGGTGAAGCGTTCAGCCTCCCCAGACGACGATCTGGGATCTAGCAATTG
GGAGGCAGCAGACTTGGGTAATGAAGAGAGAAAACAAAAGTTCTTGAGACTTATGGGTGCAGGAAAGAAGGAACATATTG
ATTGTCTTGTTTTAGGAGATCACAAATCAACATTTCATTTCCGAACAGGGGAAGAAGACAAGAAAATTAATGAAGAACTG
GAGTCTCAATATCAGCAAAGTATGGACAGTAAATTATCAGGAAGATATCGGCGACATTGTGGACTTGGCTTCAGTGAGGT
AGAAGATCATGATGGAGAAGGTGATGTGGCTGGAGATGATGATGATGACGATGATGATTCACCTGATCCTGAAAGTCCAG
ATGATTCTGAAAGCGATTCAGAGTCAGAGAAAGAAGAATCTGCTGAAGAACTCCAAGCTGCTGAGCACCCTGATGAAGTG
GAGGATCCCAAAAACAAAAAAGATGCAAAAAGCAATTATAAAATGATGTTTGTTAAATCCAGTGGTTCATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 71 .93 RPM
SRP007412_cerebellum 39 .16 RPM
SRP007412_heart 38 .56 RPM
SRP007412_kidney 56 .05 RPM
SRP007412_liver 36 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000030220 ortholog_one2many 2 retrogenes
retro_cfam_160, retro_cfam_717,
Callithrix jacchus ENSCJAG00000009626 ortholog_one2one 1 retrogene
retro_cjac_3098,
Cavia porcellus ENSCPOG00000009679 ortholog_one2one 2 retrogenes
retro_cpor_1331, retro_cpor_772,
Equus caballus ENSECAG00000011778 ortholog_one2one 1 retrogene
retro_ecab_269,
Felis catus ENSFCAG00000027747 ortholog_one2one 1 retrogene
retro_fcat_2016,
Homo sapiens ENSG00000110696 ortholog_one2one 2 retrogenes
retro_hsap_1408, retro_hsap_3898,
Macropus eugenii ENSMEUG00000011795 ortholog_one2one 1 retrogene
retro_meug_1432,
Myotis lucifugus ENSMLUG00000001589 ortholog_one2one 1 retrogene
retro_mluc_2604,
Monodelphis domestica ENSMODG00000007147 ortholog_one2one 2 retrogenes
retro_mdom_1249, retro_mdom_672,
Mus musculus ENSMUSG00000030663 ortholog_one2one 2 retrogenes
retro_mmus_2190, retro_mmus_2616,
Nomascus leucogenys ENSNLEG00000017719 ortholog_one2one 1 retrogene
retro_nleu_1425,
Otolemur garnettii ENSOGAG00000025335 ortholog_one2one 2 retrogenes
retro_ogar_1613, retro_ogar_2569,
Ochotona princeps ENSOPRG00000000154 ortholog_one2one 1 retrogene
retro_opri_761,
Rattus norvegicus ENSRNOG00000020436 ortholog_one2one 1 retrogene
retro_rnor_622,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1166 75.14 100.00
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2. retro_pabe_3178 56.90 62.84
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Download FASTA sequences of all ENSPPYG00000003458 retrocopies